Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03006

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03004 and H281DRAFT_03005 are separated by 356 nucleotidesH281DRAFT_03005 and H281DRAFT_03006 overlap by 23 nucleotidesH281DRAFT_03006 and H281DRAFT_03007 are separated by 513 nucleotides H281DRAFT_03004: H281DRAFT_03004 - MFS transporter, MHS family, shikimate and dehydroshikimate transport protein, at 29,143 to 30,459 _03004 H281DRAFT_03005: H281DRAFT_03005 - hypothetical protein, at 30,816 to 31,034 _03005 H281DRAFT_03006: H281DRAFT_03006 - transcriptional regulator, GntR family, at 31,012 to 31,731 _03006 H281DRAFT_03007: H281DRAFT_03007 - acetolactate synthase-1/2/3 large subunit, at 32,245 to 34,008 _03007 Position (kb) 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1at 30.118 kb on + strand, within H281DRAFT_03004at 30.118 kb on + strand, within H281DRAFT_03004at 30.118 kb on + strand, within H281DRAFT_03004at 30.119 kb on - strand, within H281DRAFT_03004at 30.121 kb on + strand, within H281DRAFT_03004at 30.169 kb on + strand, within H281DRAFT_03004at 30.169 kb on + strand, within H281DRAFT_03004at 30.289 kb on + strand, within H281DRAFT_03004at 30.459 kb on + strandat 30.460 kb on - strandat 30.510 kb on + strandat 30.510 kb on + strandat 30.551 kb on + strandat 30.551 kb on + strandat 30.552 kb on - strandat 30.554 kb on + strandat 30.554 kb on + strandat 30.591 kb on - strandat 30.640 kb on + strandat 30.643 kb on - strandat 30.663 kb on - strandat 30.663 kb on - strandat 30.697 kb on + strandat 30.698 kb on - strandat 30.702 kb on + strandat 30.738 kb on + strandat 30.775 kb on - strandat 30.986 kb on + strand, within H281DRAFT_03005at 30.986 kb on + strand, within H281DRAFT_03005at 30.986 kb on + strand, within H281DRAFT_03005at 30.987 kb on - strand, within H281DRAFT_03005at 30.987 kb on - strand, within H281DRAFT_03005at 31.064 kb on + strandat 31.064 kb on + strandat 31.105 kb on + strand, within H281DRAFT_03006at 31.144 kb on + strand, within H281DRAFT_03006at 31.144 kb on + strand, within H281DRAFT_03006at 31.145 kb on - strand, within H281DRAFT_03006at 31.282 kb on + strand, within H281DRAFT_03006at 31.536 kb on + strand, within H281DRAFT_03006at 31.616 kb on + strand, within H281DRAFT_03006at 31.616 kb on + strand, within H281DRAFT_03006at 31.737 kb on + strandat 31.737 kb on + strandat 31.737 kb on + strandat 31.738 kb on - strandat 31.738 kb on - strandat 31.897 kb on + strandat 32.152 kb on + strandat 32.167 kb on - strandat 32.167 kb on - strandat 32.426 kb on - strand, within H281DRAFT_03007

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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30,118 + H281DRAFT_03004 0.74 -0.4
30,118 + H281DRAFT_03004 0.74 -1.7
30,118 + H281DRAFT_03004 0.74 -0.7
30,119 - H281DRAFT_03004 0.74 -1.1
30,121 + H281DRAFT_03004 0.74 +0.4
30,169 + H281DRAFT_03004 0.78 +0.3
30,169 + H281DRAFT_03004 0.78 +0.3
30,289 + H281DRAFT_03004 0.87 -1.3
30,459 + -0.5
30,460 - +0.0
30,510 + +0.5
30,510 + -0.6
30,551 + -0.1
30,551 + +0.2
30,552 - -2.1
30,554 + -0.2
30,554 + -0.7
30,591 - -0.2
30,640 + +1.2
30,643 - -0.7
30,663 - -1.3
30,663 - -1.2
30,697 + -0.5
30,698 - +0.2
30,702 + +0.1
30,738 + -0.7
30,775 - +0.3
30,986 + H281DRAFT_03005 0.78 -0.1
30,986 + H281DRAFT_03005 0.78 -0.1
30,986 + H281DRAFT_03005 0.78 +0.0
30,987 - H281DRAFT_03005 0.78 -2.8
30,987 - H281DRAFT_03005 0.78 -1.3
31,064 + +0.7
31,064 + +0.8
31,105 + H281DRAFT_03006 0.13 -0.5
31,144 + H281DRAFT_03006 0.18 -1.7
31,144 + H281DRAFT_03006 0.18 -1.2
31,145 - H281DRAFT_03006 0.18 -1.0
31,282 + H281DRAFT_03006 0.38 -0.4
31,536 + H281DRAFT_03006 0.73 -1.8
31,616 + H281DRAFT_03006 0.84 -1.5
31,616 + H281DRAFT_03006 0.84 +0.6
31,737 + -0.9
31,737 + +0.1
31,737 + +0.2
31,738 - -0.4
31,738 - -0.9
31,897 + -0.1
32,152 + -0.5
32,167 - -0.1
32,167 - +0.3
32,426 - H281DRAFT_03007 0.10 -0.5

Or see this region's nucleotide sequence