Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02958 and H281DRAFT_02959 are separated by 44 nucleotides H281DRAFT_02959 and H281DRAFT_02960 are separated by 31 nucleotides H281DRAFT_02960 and H281DRAFT_02961 are separated by 1 nucleotides
H281DRAFT_02958: H281DRAFT_02958 - putative spermidine/putrescine transport system ATP-binding protein, at 572,250 to 573,305
_02958
H281DRAFT_02959: H281DRAFT_02959 - putative spermidine/putrescine transport system substrate-binding protein, at 573,350 to 574,651
_02959
H281DRAFT_02960: H281DRAFT_02960 - putative spermidine/putrescine transport system permease protein, at 574,683 to 575,597
_02960
H281DRAFT_02961: H281DRAFT_02961 - putative spermidine/putrescine transport system permease protein, at 575,599 to 576,495
_02961
Position (kb) 573
574
575 Strain fitness (log2 ratio) -1
0
1
2 at 572.377 kb on - strand, within H281DRAFT_02958 at 572.536 kb on - strand, within H281DRAFT_02958 at 572.661 kb on + strand, within H281DRAFT_02958 at 574.389 kb on - strand, within H281DRAFT_02959 at 574.407 kb on - strand, within H281DRAFT_02959 at 574.442 kb on - strand, within H281DRAFT_02959 at 574.613 kb on + strand at 574.614 kb on - strand at 574.845 kb on + strand, within H281DRAFT_02960 at 574.939 kb on - strand, within H281DRAFT_02960 at 575.007 kb on + strand, within H281DRAFT_02960 at 575.142 kb on - strand, within H281DRAFT_02960 at 575.197 kb on - strand, within H281DRAFT_02960
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 572,377 - H281DRAFT_02958 0.12 +0.4 572,536 - H281DRAFT_02958 0.27 +0.5 572,661 + H281DRAFT_02958 0.39 +2.0 574,389 - H281DRAFT_02959 0.80 -0.4 574,407 - H281DRAFT_02959 0.81 -0.9 574,442 - H281DRAFT_02959 0.84 +0.2 574,613 + +0.3 574,614 - -0.0 574,845 + H281DRAFT_02960 0.18 -0.1 574,939 - H281DRAFT_02960 0.28 -0.5 575,007 + H281DRAFT_02960 0.35 -0.0 575,142 - H281DRAFT_02960 0.50 +0.1 575,197 - H281DRAFT_02960 0.56 -0.3
Or see this region's nucleotide sequence