Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01388 and H281DRAFT_01389 are separated by 398 nucleotides H281DRAFT_01389 and H281DRAFT_01390 are separated by 197 nucleotides H281DRAFT_01390 and H281DRAFT_01391 are separated by 22 nucleotides
H281DRAFT_01388: H281DRAFT_01388 - Uncharacterized conserved protein, DUF2252 family, at 239,305 to 240,570
_01388
H281DRAFT_01389: H281DRAFT_01389 - PAS domain S-box-containing protein, at 240,969 to 243,668
_01389
H281DRAFT_01390: H281DRAFT_01390 - hypothetical protein, at 243,866 to 244,132
_01390
H281DRAFT_01391: H281DRAFT_01391 - two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ, at 244,155 to 245,549
_01391
Position (kb) 240
241
242
243
244 Strain fitness (log2 ratio) -1
0
1 at 240.352 kb on + strand at 240.353 kb on - strand, within H281DRAFT_01388 at 240.431 kb on + strand, within H281DRAFT_01388 at 240.431 kb on + strand, within H281DRAFT_01388 at 240.432 kb on - strand, within H281DRAFT_01388 at 240.432 kb on - strand, within H281DRAFT_01388 at 240.574 kb on + strand at 240.574 kb on + strand at 240.574 kb on + strand at 240.575 kb on - strand at 240.575 kb on - strand at 240.587 kb on + strand at 240.704 kb on - strand at 240.742 kb on - strand at 240.784 kb on + strand at 240.784 kb on + strand at 240.856 kb on + strand at 240.873 kb on + strand at 240.892 kb on - strand at 240.911 kb on + strand at 241.168 kb on - strand at 241.209 kb on + strand at 241.210 kb on - strand at 241.210 kb on - strand at 241.277 kb on + strand, within H281DRAFT_01389 at 241.278 kb on - strand, within H281DRAFT_01389 at 241.368 kb on + strand, within H281DRAFT_01389 at 241.411 kb on + strand, within H281DRAFT_01389 at 241.412 kb on - strand, within H281DRAFT_01389 at 241.856 kb on + strand, within H281DRAFT_01389 at 241.857 kb on - strand, within H281DRAFT_01389 at 242.312 kb on - strand, within H281DRAFT_01389 at 242.603 kb on + strand, within H281DRAFT_01389 at 242.633 kb on + strand, within H281DRAFT_01389 at 242.649 kb on + strand, within H281DRAFT_01389 at 242.794 kb on - strand, within H281DRAFT_01389 at 242.969 kb on + strand, within H281DRAFT_01389 at 242.970 kb on - strand, within H281DRAFT_01389 at 243.435 kb on + strand at 243.727 kb on - strand at 243.728 kb on + strand at 243.729 kb on - strand at 243.729 kb on - strand at 243.790 kb on - strand at 244.010 kb on + strand, within H281DRAFT_01390 at 244.381 kb on + strand, within H281DRAFT_01391 at 244.382 kb on - strand, within H281DRAFT_01391 at 244.382 kb on - strand, within H281DRAFT_01391
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 240,352 + -1.2 240,353 - H281DRAFT_01388 0.83 +1.4 240,431 + H281DRAFT_01388 0.89 -1.4 240,431 + H281DRAFT_01388 0.89 +0.2 240,432 - H281DRAFT_01388 0.89 +0.3 240,432 - H281DRAFT_01388 0.89 -0.5 240,574 + +0.1 240,574 + +0.0 240,574 + -0.2 240,575 - +0.5 240,575 - +0.5 240,587 + +0.6 240,704 - +0.1 240,742 - -0.3 240,784 + -0.1 240,784 + -0.6 240,856 + +0.4 240,873 + +0.3 240,892 - -0.5 240,911 + -0.2 241,168 - +0.3 241,209 + +0.1 241,210 - +0.5 241,210 - -0.1 241,277 + H281DRAFT_01389 0.11 +1.3 241,278 - H281DRAFT_01389 0.11 -0.5 241,368 + H281DRAFT_01389 0.15 -0.3 241,411 + H281DRAFT_01389 0.16 -0.2 241,412 - H281DRAFT_01389 0.16 -0.5 241,856 + H281DRAFT_01389 0.33 +0.1 241,857 - H281DRAFT_01389 0.33 -0.0 242,312 - H281DRAFT_01389 0.50 -0.3 242,603 + H281DRAFT_01389 0.61 +0.5 242,633 + H281DRAFT_01389 0.62 +0.0 242,649 + H281DRAFT_01389 0.62 +1.0 242,794 - H281DRAFT_01389 0.68 -0.1 242,969 + H281DRAFT_01389 0.74 +0.9 242,970 - H281DRAFT_01389 0.74 +0.6 243,435 + -0.2 243,727 - +0.2 243,728 + -0.5 243,729 - +0.3 243,729 - -0.4 243,790 - +0.5 244,010 + H281DRAFT_01390 0.54 -0.8 244,381 + H281DRAFT_01391 0.16 -0.5 244,382 - H281DRAFT_01391 0.16 +0.5 244,382 - H281DRAFT_01391 0.16 +0.4
Or see this region's nucleotide sequence