Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00648 and H281DRAFT_00649 are separated by 62 nucleotides H281DRAFT_00649 and H281DRAFT_00650 are separated by 64 nucleotides H281DRAFT_00650 and H281DRAFT_00651 are separated by 91 nucleotides
H281DRAFT_00648: H281DRAFT_00648 - Uncharacterized conserved protein YgbK, DUF1537 family, at 725,941 to 727,239
_00648
H281DRAFT_00649: H281DRAFT_00649 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 727,302 to 728,303
_00649
H281DRAFT_00650: H281DRAFT_00650 - transcriptional regulator, DeoR family, at 728,368 to 729,204
_00650
H281DRAFT_00651: H281DRAFT_00651 - hypothetical protein, at 729,296 to 729,715
_00651
Position (kb) 727
728
729 Strain fitness (log2 ratio) -2
-1
0
1 at 727.077 kb on - strand, within H281DRAFT_00648 at 727.178 kb on - strand at 728.334 kb on - strand at 728.334 kb on - strand at 728.521 kb on + strand, within H281DRAFT_00650 at 728.649 kb on + strand, within H281DRAFT_00650 at 729.057 kb on + strand, within H281DRAFT_00650 at 729.058 kb on - strand, within H281DRAFT_00650 at 729.138 kb on + strand at 729.139 kb on - strand at 729.208 kb on - strand at 729.244 kb on + strand at 729.244 kb on + strand at 729.245 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 727,077 - H281DRAFT_00648 0.87 -0.7 727,178 - +0.2 728,334 - +0.1 728,334 - -0.9 728,521 + H281DRAFT_00650 0.18 -1.4 728,649 + H281DRAFT_00650 0.34 -1.4 729,057 + H281DRAFT_00650 0.82 -1.7 729,058 - H281DRAFT_00650 0.82 -2.2 729,138 + +0.1 729,139 - -0.5 729,208 - +1.1 729,244 + +0.3 729,244 + -0.1 729,245 - +0.4
Or see this region's nucleotide sequence