Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00647 and H281DRAFT_00648 overlap by 4 nucleotides H281DRAFT_00648 and H281DRAFT_00649 are separated by 62 nucleotides
H281DRAFT_00647: H281DRAFT_00647 - 2-keto-3-deoxygluconate permease, at 724,964 to 725,944
_00647
H281DRAFT_00648: H281DRAFT_00648 - Uncharacterized conserved protein YgbK, DUF1537 family, at 725,941 to 727,239
_00648
H281DRAFT_00649: H281DRAFT_00649 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 727,302 to 728,303
_00649
Position (kb) 725
726
727
728 Strain fitness (log2 ratio) -1
0
1 at 724.963 kb on + strand at 724.963 kb on + strand at 724.974 kb on + strand at 724.974 kb on + strand at 724.975 kb on - strand at 725.035 kb on - strand at 725.035 kb on - strand at 725.035 kb on - strand at 725.135 kb on + strand, within H281DRAFT_00647 at 725.177 kb on + strand, within H281DRAFT_00647 at 725.232 kb on + strand, within H281DRAFT_00647 at 725.396 kb on + strand, within H281DRAFT_00647 at 725.687 kb on - strand, within H281DRAFT_00647 at 725.696 kb on + strand, within H281DRAFT_00647 at 725.697 kb on - strand, within H281DRAFT_00647 at 725.752 kb on + strand, within H281DRAFT_00647 at 725.808 kb on - strand, within H281DRAFT_00647 at 725.821 kb on + strand, within H281DRAFT_00647 at 726.176 kb on - strand, within H281DRAFT_00648 at 727.077 kb on - strand, within H281DRAFT_00648 at 727.178 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 724,963 + +1.4 724,963 + +0.1 724,974 + -0.0 724,974 + -0.8 724,975 - -1.6 725,035 - -0.7 725,035 - -0.2 725,035 - -0.4 725,135 + H281DRAFT_00647 0.17 -0.3 725,177 + H281DRAFT_00647 0.22 +0.3 725,232 + H281DRAFT_00647 0.27 -1.6 725,396 + H281DRAFT_00647 0.44 -0.5 725,687 - H281DRAFT_00647 0.74 +0.4 725,696 + H281DRAFT_00647 0.75 +0.2 725,697 - H281DRAFT_00647 0.75 -0.7 725,752 + H281DRAFT_00647 0.80 -0.6 725,808 - H281DRAFT_00647 0.86 -0.2 725,821 + H281DRAFT_00647 0.87 -0.0 726,176 - H281DRAFT_00648 0.18 +0.4 727,077 - H281DRAFT_00648 0.87 -0.7 727,178 - +0.2
Or see this region's nucleotide sequence