Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06482

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06481 and H281DRAFT_06482 are separated by 9 nucleotidesH281DRAFT_06482 and H281DRAFT_06483 overlap by 17 nucleotides H281DRAFT_06481: H281DRAFT_06481 - succinylglutamic semialdehyde dehydrogenase, at 18,275 to 19,738 _06481 H281DRAFT_06482: H281DRAFT_06482 - succinylarginine dihydrolase, at 19,748 to 21,088 _06482 H281DRAFT_06483: H281DRAFT_06483 - succinylglutamate desuccinylase, at 21,072 to 22,124 _06483 Position (kb) 19 20 21 22Strain fitness (log2 ratio) -1 0 1at 21.130 kb on - strandat 21.475 kb on - strand, within H281DRAFT_06483at 21.707 kb on + strand, within H281DRAFT_06483at 21.707 kb on + strand, within H281DRAFT_06483at 21.708 kb on - strand, within H281DRAFT_06483

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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21,130 - -1.2
21,475 - H281DRAFT_06483 0.38 -0.7
21,707 + H281DRAFT_06483 0.60 +0.6
21,707 + H281DRAFT_06483 0.60 -0.8
21,708 - H281DRAFT_06483 0.60 -0.6

Or see this region's nucleotide sequence