Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06328 and H281DRAFT_06329 overlap by 44 nucleotides H281DRAFT_06329 and H281DRAFT_06330 overlap by 4 nucleotides H281DRAFT_06330 and H281DRAFT_06331 overlap by 4 nucleotides
H281DRAFT_06328: H281DRAFT_06328 - transcriptional regulator, propionate catabolism operon regulatory protein, at 863 to 3,052
_06328
H281DRAFT_06329: H281DRAFT_06329 - transcriptional regulator, AraC family, at 3,009 to 3,419
_06329
H281DRAFT_06330: H281DRAFT_06330 - sarcosine oxidase subunit beta, at 3,416 to 4,585
_06330
H281DRAFT_06331: H281DRAFT_06331 - NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, at 4,582 to 5,973
_06331
Position (kb) 3
4
5 Strain fitness (log2 ratio) -2
-1
0
1 at 2.490 kb on - strand, within H281DRAFT_06328 at 2.492 kb on + strand, within H281DRAFT_06328 at 2.574 kb on + strand, within H281DRAFT_06328 at 2.575 kb on - strand at 2.575 kb on - strand, within H281DRAFT_06328 at 2.675 kb on + strand, within H281DRAFT_06328 at 2.675 kb on + strand, within H281DRAFT_06328 at 2.769 kb on + strand, within H281DRAFT_06328 at 3.025 kb on - strand at 3.262 kb on + strand, within H281DRAFT_06329 at 3.262 kb on + strand, within H281DRAFT_06329 at 3.399 kb on - strand at 3.580 kb on - strand, within H281DRAFT_06330 at 3.876 kb on + strand, within H281DRAFT_06330 at 3.950 kb on - strand, within H281DRAFT_06330 at 4.001 kb on + strand, within H281DRAFT_06330 at 4.001 kb on + strand, within H281DRAFT_06330 at 4.297 kb on - strand, within H281DRAFT_06330 at 4.724 kb on + strand, within H281DRAFT_06331 at 4.725 kb on - strand, within H281DRAFT_06331 at 5.075 kb on + strand, within H281DRAFT_06331 at 5.225 kb on - strand, within H281DRAFT_06331 at 5.471 kb on + strand, within H281DRAFT_06331 at 5.471 kb on + strand, within H281DRAFT_06331 at 5.472 kb on - strand, within H281DRAFT_06331 at 5.489 kb on + strand, within H281DRAFT_06331 at 5.579 kb on + strand at 5.579 kb on + strand, within H281DRAFT_06331 at 5.579 kb on + strand, within H281DRAFT_06331 at 5.580 kb on - strand, within H281DRAFT_06331
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 2,490 - H281DRAFT_06328 0.74 +0.3 2,492 + H281DRAFT_06328 0.74 -0.0 2,574 + H281DRAFT_06328 0.78 +0.5 2,575 - +1.6 2,575 - H281DRAFT_06328 0.78 -2.0 2,675 + H281DRAFT_06328 0.83 +1.3 2,675 + H281DRAFT_06328 0.83 -0.1 2,769 + H281DRAFT_06328 0.87 -0.3 3,025 - +0.3 3,262 + H281DRAFT_06329 0.62 +0.6 3,262 + H281DRAFT_06329 0.62 +0.1 3,399 - +0.5 3,580 - H281DRAFT_06330 0.14 +0.2 3,876 + H281DRAFT_06330 0.39 +0.1 3,950 - H281DRAFT_06330 0.46 -0.3 4,001 + H281DRAFT_06330 0.50 -0.1 4,001 + H281DRAFT_06330 0.50 +0.3 4,297 - H281DRAFT_06330 0.75 +0.5 4,724 + H281DRAFT_06331 0.10 +0.2 4,725 - H281DRAFT_06331 0.10 -0.1 5,075 + H281DRAFT_06331 0.35 +0.1 5,225 - H281DRAFT_06331 0.46 +1.4 5,471 + H281DRAFT_06331 0.64 +0.0 5,471 + H281DRAFT_06331 0.64 +0.1 5,472 - H281DRAFT_06331 0.64 -0.2 5,489 + H281DRAFT_06331 0.65 -1.0 5,579 + +0.3 5,579 + H281DRAFT_06331 0.72 -0.3 5,579 + H281DRAFT_06331 0.72 +0.0 5,580 - H281DRAFT_06331 0.72 +0.0
Or see this region's nucleotide sequence