Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06111 and H281DRAFT_06112 are separated by 68 nucleotides H281DRAFT_06112 and H281DRAFT_06113 are separated by 22 nucleotides
H281DRAFT_06111: H281DRAFT_06111 - Sugar phosphate permease, at 130,315 to 131,652
_06111
H281DRAFT_06112: H281DRAFT_06112 - Predicted xylanase/chitin deacetylase, at 131,721 to 132,602
_06112
H281DRAFT_06113: H281DRAFT_06113 - aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 132,625 to 134,001
_06113
Position (kb) 131
132
133 Strain fitness (log2 ratio) -1
0
1
2 at 130.722 kb on - strand, within H281DRAFT_06111 at 130.731 kb on - strand, within H281DRAFT_06111 at 130.786 kb on - strand, within H281DRAFT_06111 at 130.833 kb on + strand, within H281DRAFT_06111 at 130.935 kb on - strand, within H281DRAFT_06111 at 131.010 kb on + strand, within H281DRAFT_06111 at 131.011 kb on - strand, within H281DRAFT_06111 at 131.011 kb on - strand, within H281DRAFT_06111 at 131.011 kb on - strand, within H281DRAFT_06111 at 131.187 kb on + strand, within H281DRAFT_06111 at 131.246 kb on + strand, within H281DRAFT_06111 at 131.246 kb on + strand, within H281DRAFT_06111 at 131.246 kb on + strand, within H281DRAFT_06111 at 131.247 kb on - strand, within H281DRAFT_06111 at 131.312 kb on - strand, within H281DRAFT_06111 at 131.312 kb on - strand, within H281DRAFT_06111 at 131.544 kb on - strand at 131.576 kb on - strand at 131.633 kb on + strand at 131.634 kb on - strand at 131.881 kb on - strand, within H281DRAFT_06112 at 131.887 kb on + strand, within H281DRAFT_06112 at 131.887 kb on + strand, within H281DRAFT_06112 at 131.888 kb on - strand, within H281DRAFT_06112 at 131.888 kb on - strand, within H281DRAFT_06112 at 132.077 kb on + strand, within H281DRAFT_06112 at 132.077 kb on + strand, within H281DRAFT_06112 at 132.078 kb on - strand, within H281DRAFT_06112 at 132.078 kb on - strand, within H281DRAFT_06112 at 132.130 kb on + strand, within H281DRAFT_06112 at 132.131 kb on - strand, within H281DRAFT_06112 at 132.131 kb on - strand, within H281DRAFT_06112 at 132.131 kb on - strand, within H281DRAFT_06112 at 132.134 kb on - strand, within H281DRAFT_06112 at 132.535 kb on + strand at 132.536 kb on - strand at 132.536 kb on - strand at 132.715 kb on - strand at 133.345 kb on - strand, within H281DRAFT_06113 at 133.435 kb on + strand, within H281DRAFT_06113 at 133.435 kb on + strand, within H281DRAFT_06113 at 133.435 kb on + strand, within H281DRAFT_06113 at 133.435 kb on + strand, within H281DRAFT_06113 at 133.436 kb on - strand, within H281DRAFT_06113 at 133.436 kb on - strand, within H281DRAFT_06113
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 130,722 - H281DRAFT_06111 0.30 +0.7 130,731 - H281DRAFT_06111 0.31 +0.9 130,786 - H281DRAFT_06111 0.35 +0.3 130,833 + H281DRAFT_06111 0.39 +0.7 130,935 - H281DRAFT_06111 0.46 +0.1 131,010 + H281DRAFT_06111 0.52 -0.4 131,011 - H281DRAFT_06111 0.52 +0.2 131,011 - H281DRAFT_06111 0.52 -0.1 131,011 - H281DRAFT_06111 0.52 -0.5 131,187 + H281DRAFT_06111 0.65 -0.5 131,246 + H281DRAFT_06111 0.70 +0.5 131,246 + H281DRAFT_06111 0.70 -0.1 131,246 + H281DRAFT_06111 0.70 -0.9 131,247 - H281DRAFT_06111 0.70 -0.1 131,312 - H281DRAFT_06111 0.75 -0.1 131,312 - H281DRAFT_06111 0.75 +0.2 131,544 - +0.3 131,576 - +0.0 131,633 + +0.4 131,634 - -0.4 131,881 - H281DRAFT_06112 0.18 +0.3 131,887 + H281DRAFT_06112 0.19 -0.3 131,887 + H281DRAFT_06112 0.19 -0.3 131,888 - H281DRAFT_06112 0.19 +0.2 131,888 - H281DRAFT_06112 0.19 +0.1 132,077 + H281DRAFT_06112 0.40 -0.1 132,077 + H281DRAFT_06112 0.40 +0.0 132,078 - H281DRAFT_06112 0.40 +0.9 132,078 - H281DRAFT_06112 0.40 -0.1 132,130 + H281DRAFT_06112 0.46 +0.7 132,131 - H281DRAFT_06112 0.46 +0.1 132,131 - H281DRAFT_06112 0.46 -0.1 132,131 - H281DRAFT_06112 0.46 +0.2 132,134 - H281DRAFT_06112 0.47 -0.1 132,535 + +0.5 132,536 - +1.7 132,536 - +0.3 132,715 - +0.8 133,345 - H281DRAFT_06113 0.52 -0.6 133,435 + H281DRAFT_06113 0.59 +1.1 133,435 + H281DRAFT_06113 0.59 +1.3 133,435 + H281DRAFT_06113 0.59 +0.6 133,435 + H281DRAFT_06113 0.59 +1.8 133,436 - H281DRAFT_06113 0.59 +0.3 133,436 - H281DRAFT_06113 0.59 +0.2
Or see this region's nucleotide sequence