Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05940

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05939 and H281DRAFT_05940 are separated by 46 nucleotidesH281DRAFT_05940 and H281DRAFT_05941 are separated by 36 nucleotides H281DRAFT_05939: H281DRAFT_05939 - Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain, at 78,311 to 79,264 _05939 H281DRAFT_05940: H281DRAFT_05940 - polysaccharide transporter, PST family, at 79,311 to 80,615 _05940 H281DRAFT_05941: H281DRAFT_05941 - Glycosyltransferase involved in cell wall bisynthesis, at 80,652 to 81,611 _05941 Position (kb) 79 80 81Strain fitness (log2 ratio) -1 0 1at 78.566 kb on - strandat 79.408 kb on + strandat 79.408 kb on + strandat 80.652 kb on - strandat 80.839 kb on - strand, within H281DRAFT_05941at 81.530 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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78,566 - -0.7
79,408 + +0.4
79,408 + +0.0
80,652 - -1.1
80,839 - H281DRAFT_05941 0.19 -1.0
81,530 + -1.0

Or see this region's nucleotide sequence