Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05794

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05793 and H281DRAFT_05794 are separated by 475 nucleotidesH281DRAFT_05794 and H281DRAFT_05795 are separated by 195 nucleotides H281DRAFT_05793: H281DRAFT_05793 - putative acyl-CoA dehydrogenase, at 66,051 to 67,736 _05793 H281DRAFT_05794: H281DRAFT_05794 - Choline dehydrogenase, at 68,212 to 69,864 _05794 H281DRAFT_05795: H281DRAFT_05795 - Outer membrane protein OmpA, at 70,060 to 71,907 _05795 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1 2 3at 67.366 kb on + strand, within H281DRAFT_05793at 67.366 kb on + strand, within H281DRAFT_05793at 67.673 kb on - strandat 67.673 kb on - strandat 67.724 kb on + strandat 67.725 kb on - strandat 67.779 kb on + strandat 67.834 kb on + strandat 68.062 kb on + strandat 68.062 kb on + strandat 68.062 kb on + strandat 68.086 kb on + strandat 68.091 kb on + strandat 68.092 kb on - strandat 68.134 kb on + strandat 68.134 kb on + strandat 68.134 kb on + strandat 68.134 kb on + strandat 68.134 kb on + strandat 68.135 kb on - strandat 68.135 kb on - strandat 68.152 kb on + strandat 68.153 kb on - strandat 68.153 kb on - strandat 68.218 kb on + strandat 68.218 kb on + strandat 68.219 kb on - strandat 68.224 kb on + strandat 68.225 kb on - strandat 68.225 kb on - strandat 68.225 kb on - strandat 68.350 kb on - strandat 68.398 kb on + strand, within H281DRAFT_05794at 68.398 kb on + strand, within H281DRAFT_05794at 68.398 kb on + strand, within H281DRAFT_05794at 68.398 kb on + strand, within H281DRAFT_05794at 68.399 kb on - strand, within H281DRAFT_05794at 68.399 kb on - strand, within H281DRAFT_05794at 68.404 kb on + strand, within H281DRAFT_05794at 68.501 kb on - strand, within H281DRAFT_05794at 68.582 kb on - strand, within H281DRAFT_05794at 68.693 kb on + strand, within H281DRAFT_05794at 68.705 kb on + strand, within H281DRAFT_05794at 68.716 kb on + strandat 68.768 kb on - strand, within H281DRAFT_05794at 68.768 kb on - strand, within H281DRAFT_05794at 68.768 kb on - strand, within H281DRAFT_05794at 68.815 kb on + strand, within H281DRAFT_05794at 68.816 kb on - strand, within H281DRAFT_05794at 68.822 kb on - strand, within H281DRAFT_05794at 68.822 kb on - strand, within H281DRAFT_05794at 68.848 kb on - strand, within H281DRAFT_05794at 69.029 kb on + strand, within H281DRAFT_05794at 69.029 kb on + strand, within H281DRAFT_05794at 69.029 kb on + strand, within H281DRAFT_05794at 69.030 kb on - strand, within H281DRAFT_05794at 69.245 kb on + strand, within H281DRAFT_05794at 69.324 kb on + strand, within H281DRAFT_05794at 69.324 kb on + strand, within H281DRAFT_05794at 69.324 kb on + strand, within H281DRAFT_05794at 69.325 kb on - strand, within H281DRAFT_05794at 69.325 kb on - strand, within H281DRAFT_05794at 69.325 kb on - strand, within H281DRAFT_05794at 69.325 kb on - strand, within H281DRAFT_05794at 69.325 kb on - strand, within H281DRAFT_05794at 69.325 kb on - strand, within H281DRAFT_05794at 69.325 kb on - strand, within H281DRAFT_05794at 69.343 kb on + strand, within H281DRAFT_05794at 69.344 kb on - strand, within H281DRAFT_05794at 69.356 kb on + strand, within H281DRAFT_05794at 69.356 kb on + strand, within H281DRAFT_05794at 69.356 kb on + strand, within H281DRAFT_05794at 69.356 kb on + strand, within H281DRAFT_05794at 69.356 kb on + strand, within H281DRAFT_05794at 69.357 kb on - strand, within H281DRAFT_05794at 69.357 kb on - strand, within H281DRAFT_05794at 69.357 kb on - strand, within H281DRAFT_05794at 69.357 kb on - strand, within H281DRAFT_05794at 69.357 kb on - strand, within H281DRAFT_05794at 69.357 kb on - strand, within H281DRAFT_05794at 69.357 kb on - strand, within H281DRAFT_05794at 69.544 kb on + strand, within H281DRAFT_05794at 69.610 kb on + strand, within H281DRAFT_05794at 69.610 kb on + strand, within H281DRAFT_05794at 69.611 kb on - strand, within H281DRAFT_05794at 69.611 kb on - strand, within H281DRAFT_05794at 69.611 kb on - strand, within H281DRAFT_05794at 69.611 kb on - strand, within H281DRAFT_05794at 69.611 kb on - strand, within H281DRAFT_05794at 69.611 kb on - strand, within H281DRAFT_05794at 69.611 kb on - strand, within H281DRAFT_05794at 69.996 kb on + strandat 69.996 kb on + strandat 70.109 kb on + strandat 70.110 kb on - strandat 70.559 kb on - strand, within H281DRAFT_05795at 70.559 kb on - strand, within H281DRAFT_05795at 70.807 kb on + strand, within H281DRAFT_05795at 70.808 kb on - strand, within H281DRAFT_05795at 70.808 kb on - strand, within H281DRAFT_05795

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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67,366 + H281DRAFT_05793 0.78 +0.6
67,366 + H281DRAFT_05793 0.78 +0.2
67,673 - -0.5
67,673 - +0.4
67,724 + -1.3
67,725 - -0.1
67,779 + +0.7
67,834 + -0.0
68,062 + +0.1
68,062 + +0.1
68,062 + +0.6
68,086 + +0.6
68,091 + +0.3
68,092 - +0.6
68,134 + -0.5
68,134 + -0.8
68,134 + -0.3
68,134 + +0.3
68,134 + -0.5
68,135 - +1.0
68,135 - -0.1
68,152 + +3.1
68,153 - -0.2
68,153 - +0.0
68,218 + +0.6
68,218 + +0.2
68,219 - -0.5
68,224 + +0.9
68,225 - +0.4
68,225 - -0.3
68,225 - -0.7
68,350 - +0.4
68,398 + H281DRAFT_05794 0.11 +0.9
68,398 + H281DRAFT_05794 0.11 -0.7
68,398 + H281DRAFT_05794 0.11 +0.7
68,398 + H281DRAFT_05794 0.11 +0.0
68,399 - H281DRAFT_05794 0.11 +0.1
68,399 - H281DRAFT_05794 0.11 -0.3
68,404 + H281DRAFT_05794 0.12 +0.5
68,501 - H281DRAFT_05794 0.17 -0.4
68,582 - H281DRAFT_05794 0.22 -0.7
68,693 + H281DRAFT_05794 0.29 +0.3
68,705 + H281DRAFT_05794 0.30 -0.4
68,716 + +0.7
68,768 - H281DRAFT_05794 0.34 +0.2
68,768 - H281DRAFT_05794 0.34 +0.2
68,768 - H281DRAFT_05794 0.34 +0.1
68,815 + H281DRAFT_05794 0.36 -0.5
68,816 - H281DRAFT_05794 0.37 +2.6
68,822 - H281DRAFT_05794 0.37 -0.3
68,822 - H281DRAFT_05794 0.37 -0.2
68,848 - H281DRAFT_05794 0.38 -0.5
69,029 + H281DRAFT_05794 0.49 +0.0
69,029 + H281DRAFT_05794 0.49 +0.3
69,029 + H281DRAFT_05794 0.49 +0.5
69,030 - H281DRAFT_05794 0.49 +0.2
69,245 + H281DRAFT_05794 0.62 +0.6
69,324 + H281DRAFT_05794 0.67 -0.2
69,324 + H281DRAFT_05794 0.67 -0.2
69,324 + H281DRAFT_05794 0.67 +0.5
69,325 - H281DRAFT_05794 0.67 -0.5
69,325 - H281DRAFT_05794 0.67 +0.6
69,325 - H281DRAFT_05794 0.67 +0.2
69,325 - H281DRAFT_05794 0.67 +0.3
69,325 - H281DRAFT_05794 0.67 +0.2
69,325 - H281DRAFT_05794 0.67 +0.2
69,325 - H281DRAFT_05794 0.67 -0.5
69,343 + H281DRAFT_05794 0.68 -0.1
69,344 - H281DRAFT_05794 0.68 -1.8
69,356 + H281DRAFT_05794 0.69 +0.5
69,356 + H281DRAFT_05794 0.69 +0.8
69,356 + H281DRAFT_05794 0.69 +0.6
69,356 + H281DRAFT_05794 0.69 +1.4
69,356 + H281DRAFT_05794 0.69 -0.1
69,357 - H281DRAFT_05794 0.69 +0.3
69,357 - H281DRAFT_05794 0.69 +0.4
69,357 - H281DRAFT_05794 0.69 -0.5
69,357 - H281DRAFT_05794 0.69 -0.2
69,357 - H281DRAFT_05794 0.69 -0.2
69,357 - H281DRAFT_05794 0.69 -0.1
69,357 - H281DRAFT_05794 0.69 -0.4
69,544 + H281DRAFT_05794 0.81 +0.3
69,610 + H281DRAFT_05794 0.85 -0.3
69,610 + H281DRAFT_05794 0.85 -0.4
69,611 - H281DRAFT_05794 0.85 -0.5
69,611 - H281DRAFT_05794 0.85 -0.4
69,611 - H281DRAFT_05794 0.85 +0.4
69,611 - H281DRAFT_05794 0.85 -0.8
69,611 - H281DRAFT_05794 0.85 +1.7
69,611 - H281DRAFT_05794 0.85 -0.2
69,611 - H281DRAFT_05794 0.85 -0.4
69,996 + -1.0
69,996 + -1.2
70,109 + +0.4
70,110 - -0.2
70,559 - H281DRAFT_05795 0.27 +0.0
70,559 - H281DRAFT_05795 0.27 -0.2
70,807 + H281DRAFT_05795 0.40 +0.6
70,808 - H281DRAFT_05795 0.40 -0.0
70,808 - H281DRAFT_05795 0.40 -0.4

Or see this region's nucleotide sequence