Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05772

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05771 and H281DRAFT_05772 are separated by 175 nucleotidesH281DRAFT_05772 and H281DRAFT_05773 are separated by 10 nucleotides H281DRAFT_05771: H281DRAFT_05771 - c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains, at 44,549 to 45,337 _05771 H281DRAFT_05772: H281DRAFT_05772 - flagellar hook-associated protein 1 FlgK, at 45,513 to 47,486 _05772 H281DRAFT_05773: H281DRAFT_05773 - flagellar hook-associated protein 3 FlgL, at 47,497 to 48,720 _05773 Position (kb) 45 46 47 48Strain fitness (log2 ratio) -1 0 1at 44.951 kb on + strand, within H281DRAFT_05771at 44.951 kb on + strand, within H281DRAFT_05771at 44.952 kb on - strand, within H281DRAFT_05771at 44.954 kb on + strand, within H281DRAFT_05771at 44.954 kb on + strand, within H281DRAFT_05771at 44.955 kb on - strand, within H281DRAFT_05771at 44.955 kb on - strand, within H281DRAFT_05771at 44.955 kb on - strand, within H281DRAFT_05771at 44.972 kb on + strand, within H281DRAFT_05771at 44.972 kb on + strand, within H281DRAFT_05771at 44.973 kb on - strand, within H281DRAFT_05771at 44.973 kb on - strand, within H281DRAFT_05771at 45.005 kb on + strand, within H281DRAFT_05771at 45.005 kb on + strand, within H281DRAFT_05771at 45.456 kb on - strandat 45.462 kb on + strandat 45.462 kb on + strandat 45.462 kb on + strandat 45.463 kb on - strandat 45.615 kb on - strandat 45.615 kb on - strandat 45.655 kb on - strandat 45.655 kb on - strandat 45.655 kb on - strandat 45.711 kb on + strand, within H281DRAFT_05772at 45.720 kb on + strand, within H281DRAFT_05772at 45.720 kb on + strand, within H281DRAFT_05772at 45.720 kb on + strand, within H281DRAFT_05772at 45.741 kb on - strand, within H281DRAFT_05772at 45.774 kb on + strand, within H281DRAFT_05772at 45.849 kb on + strand, within H281DRAFT_05772at 45.850 kb on - strand, within H281DRAFT_05772at 45.896 kb on + strand, within H281DRAFT_05772at 45.963 kb on + strand, within H281DRAFT_05772at 46.027 kb on - strand, within H281DRAFT_05772at 46.176 kb on + strand, within H281DRAFT_05772at 46.176 kb on + strand, within H281DRAFT_05772at 46.281 kb on + strand, within H281DRAFT_05772at 46.282 kb on - strand, within H281DRAFT_05772at 46.524 kb on + strand, within H281DRAFT_05772at 46.602 kb on + strand, within H281DRAFT_05772at 46.629 kb on + strand, within H281DRAFT_05772at 46.629 kb on + strand, within H281DRAFT_05772at 46.631 kb on + strand, within H281DRAFT_05772at 46.631 kb on + strand, within H281DRAFT_05772at 46.632 kb on - strand, within H281DRAFT_05772at 46.632 kb on - strand, within H281DRAFT_05772at 46.897 kb on - strand, within H281DRAFT_05772at 46.897 kb on - strand, within H281DRAFT_05772at 47.001 kb on + strand, within H281DRAFT_05772at 47.002 kb on - strand, within H281DRAFT_05772at 47.002 kb on - strand, within H281DRAFT_05772at 47.262 kb on + strand, within H281DRAFT_05772at 47.416 kb on - strandat 47.416 kb on - strandat 47.575 kb on + strandat 47.681 kb on - strand, within H281DRAFT_05773at 47.897 kb on - strand, within H281DRAFT_05773at 47.897 kb on - strand, within H281DRAFT_05773at 47.897 kb on - strand, within H281DRAFT_05773at 47.912 kb on - strand, within H281DRAFT_05773at 47.932 kb on + strand, within H281DRAFT_05773at 47.933 kb on - strand, within H281DRAFT_05773at 47.933 kb on - strand, within H281DRAFT_05773at 48.167 kb on - strand, within H281DRAFT_05773at 48.167 kb on - strand, within H281DRAFT_05773at 48.196 kb on + strand, within H281DRAFT_05773at 48.196 kb on + strand, within H281DRAFT_05773at 48.197 kb on - strand, within H281DRAFT_05773at 48.197 kb on - strand, within H281DRAFT_05773

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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44,951 + H281DRAFT_05771 0.51 -0.9
44,951 + H281DRAFT_05771 0.51 -0.1
44,952 - H281DRAFT_05771 0.51 -1.5
44,954 + H281DRAFT_05771 0.51 -0.4
44,954 + H281DRAFT_05771 0.51 -0.3
44,955 - H281DRAFT_05771 0.51 -0.7
44,955 - H281DRAFT_05771 0.51 -0.6
44,955 - H281DRAFT_05771 0.51 -0.6
44,972 + H281DRAFT_05771 0.54 -0.5
44,972 + H281DRAFT_05771 0.54 -1.1
44,973 - H281DRAFT_05771 0.54 -0.3
44,973 - H281DRAFT_05771 0.54 -0.6
45,005 + H281DRAFT_05771 0.58 -0.4
45,005 + H281DRAFT_05771 0.58 -0.9
45,456 - +0.1
45,462 + -0.6
45,462 + +0.1
45,462 + +0.2
45,463 - -0.6
45,615 - +0.5
45,615 - +0.6
45,655 - -1.4
45,655 - +0.5
45,655 - -0.3
45,711 + H281DRAFT_05772 0.10 +0.0
45,720 + H281DRAFT_05772 0.10 -0.2
45,720 + H281DRAFT_05772 0.10 +0.4
45,720 + H281DRAFT_05772 0.10 -0.0
45,741 - H281DRAFT_05772 0.12 -0.1
45,774 + H281DRAFT_05772 0.13 -0.2
45,849 + H281DRAFT_05772 0.17 +0.2
45,850 - H281DRAFT_05772 0.17 -0.3
45,896 + H281DRAFT_05772 0.19 +0.1
45,963 + H281DRAFT_05772 0.23 +0.2
46,027 - H281DRAFT_05772 0.26 +0.1
46,176 + H281DRAFT_05772 0.34 -0.5
46,176 + H281DRAFT_05772 0.34 -0.3
46,281 + H281DRAFT_05772 0.39 +0.3
46,282 - H281DRAFT_05772 0.39 +0.0
46,524 + H281DRAFT_05772 0.51 -0.0
46,602 + H281DRAFT_05772 0.55 +0.2
46,629 + H281DRAFT_05772 0.57 +0.3
46,629 + H281DRAFT_05772 0.57 +0.1
46,631 + H281DRAFT_05772 0.57 -0.2
46,631 + H281DRAFT_05772 0.57 +0.2
46,632 - H281DRAFT_05772 0.57 -0.2
46,632 - H281DRAFT_05772 0.57 -0.3
46,897 - H281DRAFT_05772 0.70 -0.3
46,897 - H281DRAFT_05772 0.70 -0.0
47,001 + H281DRAFT_05772 0.75 +0.8
47,002 - H281DRAFT_05772 0.75 -0.3
47,002 - H281DRAFT_05772 0.75 +0.2
47,262 + H281DRAFT_05772 0.89 +0.4
47,416 - +1.0
47,416 - +0.1
47,575 + +0.5
47,681 - H281DRAFT_05773 0.15 +0.2
47,897 - H281DRAFT_05773 0.33 -0.3
47,897 - H281DRAFT_05773 0.33 +0.1
47,897 - H281DRAFT_05773 0.33 +0.4
47,912 - H281DRAFT_05773 0.34 -0.3
47,932 + H281DRAFT_05773 0.36 -0.3
47,933 - H281DRAFT_05773 0.36 +0.4
47,933 - H281DRAFT_05773 0.36 +0.0
48,167 - H281DRAFT_05773 0.55 -0.0
48,167 - H281DRAFT_05773 0.55 +0.5
48,196 + H281DRAFT_05773 0.57 +0.0
48,196 + H281DRAFT_05773 0.57 -0.5
48,197 - H281DRAFT_05773 0.57 +0.0
48,197 - H281DRAFT_05773 0.57 +0.1

Or see this region's nucleotide sequence