Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05626 and H281DRAFT_05627 are separated by 458 nucleotides H281DRAFT_05627 and H281DRAFT_05628 are separated by 15 nucleotides H281DRAFT_05628 and H281DRAFT_05629 are separated by 3 nucleotides H281DRAFT_05629 and H281DRAFT_05630 are separated by 66 nucleotides H281DRAFT_05630 and H281DRAFT_05631 are separated by 102 nucleotides
H281DRAFT_05626: H281DRAFT_05626 - two component transcriptional regulator, winged helix family, at 53,162 to 53,902
_05626
H281DRAFT_05627: H281DRAFT_05627 - hypothetical protein, at 54,361 to 54,552
_05627
H281DRAFT_05628: H281DRAFT_05628 - hypothetical protein, at 54,568 to 54,765
_05628
H281DRAFT_05629: H281DRAFT_05629 - hypothetical protein, at 54,769 to 55,506
_05629
H281DRAFT_05630: H281DRAFT_05630 - flagellar L-ring protein precursor FlgH, at 55,573 to 56,241
_05630
H281DRAFT_05631: H281DRAFT_05631 - two component transcriptional regulator, winged helix family, at 56,344 to 57,087
_05631
Position (kb) 54
55
56 Strain fitness (log2 ratio) -1
0
1
2 at 53.914 kb on - strand at 53.995 kb on + strand at 54.023 kb on + strand at 54.023 kb on + strand at 54.023 kb on + strand at 54.024 kb on - strand at 54.024 kb on - strand at 54.024 kb on - strand at 54.039 kb on + strand at 54.039 kb on + strand at 54.039 kb on + strand at 54.270 kb on + strand at 54.270 kb on + strand at 54.270 kb on + strand at 54.270 kb on + strand at 54.271 kb on - strand at 54.274 kb on + strand at 54.298 kb on - strand at 54.540 kb on + strand at 54.541 kb on - strand at 55.183 kb on - strand, within H281DRAFT_05629 at 55.233 kb on - strand, within H281DRAFT_05629 at 55.233 kb on - strand, within H281DRAFT_05629 at 55.357 kb on + strand, within H281DRAFT_05629 at 55.357 kb on + strand, within H281DRAFT_05629 at 55.357 kb on + strand, within H281DRAFT_05629 at 55.358 kb on - strand, within H281DRAFT_05629 at 55.361 kb on + strand, within H281DRAFT_05629 at 55.361 kb on + strand, within H281DRAFT_05629 at 55.362 kb on - strand, within H281DRAFT_05629 at 55.430 kb on - strand, within H281DRAFT_05629 at 55.578 kb on + strand at 55.717 kb on + strand, within H281DRAFT_05630 at 55.744 kb on + strand, within H281DRAFT_05630 at 55.744 kb on + strand, within H281DRAFT_05630 at 55.745 kb on - strand, within H281DRAFT_05630 at 55.804 kb on + strand, within H281DRAFT_05630 at 55.805 kb on - strand, within H281DRAFT_05630 at 55.806 kb on + strand, within H281DRAFT_05630 at 55.818 kb on + strand, within H281DRAFT_05630 at 56.101 kb on - strand, within H281DRAFT_05630 at 56.122 kb on + strand, within H281DRAFT_05630 at 56.123 kb on - strand, within H281DRAFT_05630 at 56.154 kb on + strand, within H281DRAFT_05630 at 56.154 kb on + strand, within H281DRAFT_05630 at 56.154 kb on + strand, within H281DRAFT_05630
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 53,914 - +1.5 53,995 + +0.4 54,023 + +0.0 54,023 + -0.5 54,023 + -0.4 54,024 - -0.0 54,024 - +2.3 54,024 - -0.0 54,039 + +0.6 54,039 + +0.5 54,039 + +0.1 54,270 + +0.2 54,270 + -0.6 54,270 + +0.4 54,270 + +0.8 54,271 - -0.4 54,274 + +1.0 54,298 - +0.2 54,540 + -0.1 54,541 - +0.1 55,183 - H281DRAFT_05629 0.56 +0.6 55,233 - H281DRAFT_05629 0.63 +1.0 55,233 - H281DRAFT_05629 0.63 -0.0 55,357 + H281DRAFT_05629 0.80 +0.2 55,357 + H281DRAFT_05629 0.80 +0.2 55,357 + H281DRAFT_05629 0.80 +0.0 55,358 - H281DRAFT_05629 0.80 +1.4 55,361 + H281DRAFT_05629 0.80 -0.1 55,361 + H281DRAFT_05629 0.80 +0.2 55,362 - H281DRAFT_05629 0.80 +1.0 55,430 - H281DRAFT_05629 0.90 +1.3 55,578 + +0.5 55,717 + H281DRAFT_05630 0.22 -0.1 55,744 + H281DRAFT_05630 0.26 -0.4 55,744 + H281DRAFT_05630 0.26 -0.3 55,745 - H281DRAFT_05630 0.26 +1.0 55,804 + H281DRAFT_05630 0.35 -0.0 55,805 - H281DRAFT_05630 0.35 +0.2 55,806 + H281DRAFT_05630 0.35 -0.3 55,818 + H281DRAFT_05630 0.37 +0.4 56,101 - H281DRAFT_05630 0.79 -0.3 56,122 + H281DRAFT_05630 0.82 +0.5 56,123 - H281DRAFT_05630 0.82 +0.5 56,154 + H281DRAFT_05630 0.87 -1.2 56,154 + H281DRAFT_05630 0.87 -0.1 56,154 + H281DRAFT_05630 0.87 +0.3
Or see this region's nucleotide sequence