Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05099 and H281DRAFT_05100 are separated by 348 nucleotides H281DRAFT_05100 and H281DRAFT_05101 are separated by 64 nucleotides
H281DRAFT_05099: H281DRAFT_05099 - Aspartate/methionine/tyrosine aminotransferase, at 41,269 to 42,495
_05099
H281DRAFT_05100: H281DRAFT_05100 - condensin subunit ScpB, at 42,844 to 43,977
_05100
H281DRAFT_05101: H281DRAFT_05101 - ribosomal large subunit pseudouridine synthase B (EC 5.4.99.-), at 44,042 to 45,937
_05101
Position (kb) 42
43
44 Strain fitness (log2 ratio) -1
0
1 at 41.902 kb on + strand, within H281DRAFT_05099 at 41.914 kb on + strand, within H281DRAFT_05099 at 41.914 kb on + strand, within H281DRAFT_05099 at 41.915 kb on - strand, within H281DRAFT_05099 at 41.915 kb on - strand, within H281DRAFT_05099 at 42.112 kb on + strand, within H281DRAFT_05099 at 42.113 kb on - strand, within H281DRAFT_05099 at 42.286 kb on + strand, within H281DRAFT_05099 at 42.286 kb on + strand, within H281DRAFT_05099 at 42.287 kb on - strand, within H281DRAFT_05099 at 42.287 kb on - strand, within H281DRAFT_05099 at 42.418 kb on + strand at 42.418 kb on + strand at 42.493 kb on + strand at 42.494 kb on - strand at 42.494 kb on - strand at 42.584 kb on + strand at 42.647 kb on + strand at 42.650 kb on + strand at 42.650 kb on + strand at 42.650 kb on + strand at 42.755 kb on + strand at 43.487 kb on + strand, within H281DRAFT_05100
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 41,902 + H281DRAFT_05099 0.52 -0.3 41,914 + H281DRAFT_05099 0.53 -0.6 41,914 + H281DRAFT_05099 0.53 -0.1 41,915 - H281DRAFT_05099 0.53 +0.1 41,915 - H281DRAFT_05099 0.53 -0.0 42,112 + H281DRAFT_05099 0.69 +0.9 42,113 - H281DRAFT_05099 0.69 -0.2 42,286 + H281DRAFT_05099 0.83 -0.3 42,286 + H281DRAFT_05099 0.83 +1.4 42,287 - H281DRAFT_05099 0.83 -0.8 42,287 - H281DRAFT_05099 0.83 -1.0 42,418 + -0.1 42,418 + +0.2 42,493 + +0.2 42,494 - -0.4 42,494 - -0.7 42,584 + -0.2 42,647 + -0.8 42,650 + -0.9 42,650 + +0.4 42,650 + +0.4 42,755 + -1.3 43,487 + H281DRAFT_05100 0.57 -0.5
Or see this region's nucleotide sequence