Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04582 and H281DRAFT_04583 are separated by 317 nucleotides H281DRAFT_04583 and H281DRAFT_04584 are separated by 45 nucleotides H281DRAFT_04584 and H281DRAFT_04585 are separated by 260 nucleotides H281DRAFT_04585 and H281DRAFT_04586 are separated by 48 nucleotides
H281DRAFT_04582: H281DRAFT_04582 - ADP-ribose pyrophosphatase, at 315,839 to 316,429
_04582
H281DRAFT_04583: H281DRAFT_04583 - hypothetical protein, at 316,747 to 316,992
_04583
H281DRAFT_04584: H281DRAFT_04584 - transcriptional regulator, AlpA family, at 317,038 to 317,562
_04584
H281DRAFT_04585: H281DRAFT_04585 - hypothetical protein, at 317,823 to 318,248
_04585
H281DRAFT_04586: H281DRAFT_04586 - hypothetical protein, at 318,297 to 319,493
_04586
Position (kb) 317
318 Strain fitness (log2 ratio) -1
0
1
2 at 316.116 kb on + strand, within H281DRAFT_04582 at 316.156 kb on + strand, within H281DRAFT_04582 at 316.170 kb on - strand, within H281DRAFT_04582 at 316.205 kb on + strand, within H281DRAFT_04582 at 316.359 kb on + strand, within H281DRAFT_04582 at 316.360 kb on - strand, within H281DRAFT_04582 at 316.466 kb on + strand at 316.466 kb on + strand at 316.466 kb on + strand at 316.467 kb on - strand at 316.467 kb on - strand at 316.554 kb on + strand at 316.572 kb on - strand at 316.606 kb on - strand at 316.611 kb on + strand at 316.612 kb on - strand at 316.612 kb on - strand at 316.614 kb on + strand at 316.615 kb on - strand at 316.691 kb on + strand at 316.732 kb on - strand at 316.778 kb on + strand, within H281DRAFT_04583 at 316.778 kb on + strand, within H281DRAFT_04583 at 316.779 kb on - strand, within H281DRAFT_04583 at 316.779 kb on - strand, within H281DRAFT_04583 at 316.858 kb on + strand, within H281DRAFT_04583 at 316.858 kb on + strand at 316.858 kb on + strand, within H281DRAFT_04583 at 316.859 kb on - strand, within H281DRAFT_04583 at 316.859 kb on - strand, within H281DRAFT_04583 at 316.868 kb on - strand, within H281DRAFT_04583 at 316.870 kb on - strand, within H281DRAFT_04583 at 316.870 kb on - strand, within H281DRAFT_04583 at 317.032 kb on + strand at 317.032 kb on + strand at 317.033 kb on - strand at 317.045 kb on - strand at 317.232 kb on + strand, within H281DRAFT_04584 at 317.443 kb on + strand, within H281DRAFT_04584 at 317.462 kb on + strand at 317.630 kb on + strand at 317.630 kb on + strand at 317.631 kb on - strand at 317.637 kb on + strand at 317.638 kb on - strand at 317.638 kb on - strand at 317.638 kb on - strand at 317.695 kb on + strand at 317.839 kb on + strand at 317.839 kb on + strand at 317.840 kb on - strand at 318.062 kb on - strand, within H281DRAFT_04585 at 318.144 kb on - strand, within H281DRAFT_04585 at 318.246 kb on + strand at 318.292 kb on + strand at 318.292 kb on + strand at 318.292 kb on + strand at 318.293 kb on - strand at 318.293 kb on - strand at 318.293 kb on - strand at 318.293 kb on - strand at 318.296 kb on + strand at 318.296 kb on + strand at 318.296 kb on + strand at 318.297 kb on - strand at 318.309 kb on + strand at 318.309 kb on + strand at 318.391 kb on + strand at 318.392 kb on - strand at 318.401 kb on + strand at 318.401 kb on + strand at 318.402 kb on - strand at 318.487 kb on - strand, within H281DRAFT_04586 at 318.521 kb on + strand, within H281DRAFT_04586 at 318.521 kb on + strand, within H281DRAFT_04586 at 318.521 kb on + strand, within H281DRAFT_04586 at 318.521 kb on + strand, within H281DRAFT_04586 at 318.521 kb on + strand, within H281DRAFT_04586 at 318.522 kb on - strand, within H281DRAFT_04586 at 318.562 kb on + strand, within H281DRAFT_04586
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 316,116 + H281DRAFT_04582 0.47 +1.7 316,156 + H281DRAFT_04582 0.54 +0.5 316,170 - H281DRAFT_04582 0.56 -0.4 316,205 + H281DRAFT_04582 0.62 +0.2 316,359 + H281DRAFT_04582 0.88 -0.0 316,360 - H281DRAFT_04582 0.88 -0.3 316,466 + +1.1 316,466 + +0.4 316,466 + +0.7 316,467 - -0.5 316,467 - +0.2 316,554 + -1.1 316,572 - +0.9 316,606 - -0.2 316,611 + +0.8 316,612 - +0.7 316,612 - +0.6 316,614 + -1.6 316,615 - +1.0 316,691 + +0.3 316,732 - -0.9 316,778 + H281DRAFT_04583 0.13 -0.5 316,778 + H281DRAFT_04583 0.13 -1.7 316,779 - H281DRAFT_04583 0.13 +0.1 316,779 - H281DRAFT_04583 0.13 -0.8 316,858 + H281DRAFT_04583 0.45 -0.1 316,858 + +1.5 316,858 + H281DRAFT_04583 0.45 -0.2 316,859 - H281DRAFT_04583 0.46 -1.2 316,859 - H281DRAFT_04583 0.46 -0.9 316,868 - H281DRAFT_04583 0.49 -0.2 316,870 - H281DRAFT_04583 0.50 -0.8 316,870 - H281DRAFT_04583 0.50 -1.6 317,032 + +0.5 317,032 + +0.3 317,033 - -1.6 317,045 - -1.2 317,232 + H281DRAFT_04584 0.37 +0.4 317,443 + H281DRAFT_04584 0.77 -1.2 317,462 + -0.5 317,630 + -0.2 317,630 + +1.6 317,631 - +1.1 317,637 + +0.0 317,638 - -0.7 317,638 - -1.2 317,638 - -0.6 317,695 + -0.3 317,839 + +0.7 317,839 + +0.3 317,840 - +0.5 318,062 - H281DRAFT_04585 0.56 +0.2 318,144 - H281DRAFT_04585 0.75 +0.5 318,246 + +0.2 318,292 + -0.0 318,292 + +1.8 318,292 + -0.1 318,293 - +0.1 318,293 - +0.6 318,293 - +0.1 318,293 - -0.6 318,296 + -0.4 318,296 + +0.0 318,296 + +0.3 318,297 - -0.8 318,309 + -0.5 318,309 + -0.2 318,391 + +0.6 318,392 - -0.0 318,401 + +0.7 318,401 + +0.5 318,402 - +0.0 318,487 - H281DRAFT_04586 0.16 -0.2 318,521 + H281DRAFT_04586 0.19 +0.2 318,521 + H281DRAFT_04586 0.19 -0.5 318,521 + H281DRAFT_04586 0.19 +0.0 318,521 + H281DRAFT_04586 0.19 +0.4 318,521 + H281DRAFT_04586 0.19 +1.1 318,522 - H281DRAFT_04586 0.19 +0.2 318,562 + H281DRAFT_04586 0.22 +0.1
Or see this region's nucleotide sequence