Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04353 and H281DRAFT_04354 are separated by 115 nucleotides H281DRAFT_04354 and H281DRAFT_04355 are separated by 115 nucleotides H281DRAFT_04355 and H281DRAFT_04356 are separated by 83 nucleotides
H281DRAFT_04353: H281DRAFT_04353 - 3-oxoacyl-[acyl-carrier-protein] synthase II, at 70,143 to 71,429
_04353
H281DRAFT_04354: H281DRAFT_04354 - hypothetical protein, at 71,545 to 71,928
_04354
H281DRAFT_04355: H281DRAFT_04355 - RNA polymerase, sigma-24 subunit, RpoE, at 72,044 to 72,643
_04355
H281DRAFT_04356: H281DRAFT_04356 - anti sigma-E protein, RseA, at 72,727 to 73,341
_04356
Position (kb) 71
72 Strain fitness (log2 ratio) -1
0
1
2
3 at 71.518 kb on + strand at 71.519 kb on - strand at 71.593 kb on + strand, within H281DRAFT_04354 at 71.593 kb on + strand, within H281DRAFT_04354 at 71.593 kb on + strand, within H281DRAFT_04354 at 71.594 kb on - strand, within H281DRAFT_04354 at 71.594 kb on - strand, within H281DRAFT_04354 at 71.595 kb on + strand, within H281DRAFT_04354 at 71.595 kb on + strand at 71.595 kb on + strand, within H281DRAFT_04354 at 71.595 kb on + strand, within H281DRAFT_04354 at 71.595 kb on - strand, within H281DRAFT_04354 at 71.596 kb on - strand, within H281DRAFT_04354 at 71.596 kb on - strand, within H281DRAFT_04354 at 71.596 kb on - strand, within H281DRAFT_04354 at 71.596 kb on - strand, within H281DRAFT_04354 at 71.596 kb on - strand, within H281DRAFT_04354 at 71.664 kb on + strand, within H281DRAFT_04354 at 71.932 kb on + strand at 71.941 kb on + strand at 71.973 kb on - strand at 71.998 kb on - strand at 71.998 kb on - strand at 71.998 kb on - strand at 72.677 kb on + strand at 72.677 kb on + strand at 72.686 kb on + strand at 72.686 kb on + strand at 72.711 kb on + strand at 72.711 kb on + strand at 72.711 kb on + strand at 72.712 kb on - strand at 72.712 kb on - strand at 72.878 kb on - strand, within H281DRAFT_04356
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 71,518 + -0.4 71,519 - -0.2 71,593 + H281DRAFT_04354 0.12 +0.2 71,593 + H281DRAFT_04354 0.12 -0.2 71,593 + H281DRAFT_04354 0.12 +0.6 71,594 - H281DRAFT_04354 0.13 -0.1 71,594 - H281DRAFT_04354 0.13 +0.3 71,595 + H281DRAFT_04354 0.13 +0.3 71,595 + +0.4 71,595 + H281DRAFT_04354 0.13 +0.1 71,595 + H281DRAFT_04354 0.13 -0.2 71,595 - H281DRAFT_04354 0.13 -0.4 71,596 - H281DRAFT_04354 0.13 -0.1 71,596 - H281DRAFT_04354 0.13 +0.2 71,596 - H281DRAFT_04354 0.13 -0.4 71,596 - H281DRAFT_04354 0.13 -0.7 71,596 - H281DRAFT_04354 0.13 -0.5 71,664 + H281DRAFT_04354 0.31 -0.4 71,932 + -0.2 71,941 + +0.5 71,973 - -0.8 71,998 - +0.4 71,998 - -0.6 71,998 - +0.0 72,677 + -0.5 72,677 + +0.7 72,686 + +0.2 72,686 + +3.1 72,711 + -0.0 72,711 + +0.2 72,711 + -1.6 72,712 - +1.1 72,712 - -0.1 72,878 - H281DRAFT_04356 0.25 +1.1
Or see this region's nucleotide sequence