Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04291

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04289 and H281DRAFT_04290 are separated by 21 nucleotidesH281DRAFT_04290 and H281DRAFT_04291 are separated by 241 nucleotidesH281DRAFT_04291 and H281DRAFT_04292 are separated by 172 nucleotidesH281DRAFT_04292 and H281DRAFT_04293 are separated by 120 nucleotides H281DRAFT_04289: H281DRAFT_04289 - DNA repair photolyase, at 5,295 to 6,440 _04289 H281DRAFT_04290: H281DRAFT_04290 - TM2 domain-containing membrane protein YozV, at 6,462 to 6,929 _04290 H281DRAFT_04291: H281DRAFT_04291 - hypothetical protein, at 7,171 to 8,340 _04291 H281DRAFT_04292: H281DRAFT_04292 - SSU ribosomal protein S16P, at 8,513 to 8,767 _04292 H281DRAFT_04293: H281DRAFT_04293 - 16S rRNA processing protein RimM, at 8,888 to 9,646 _04293 Position (kb) 7 8 9Strain fitness (log2 ratio) -1 0 1 2at 6.233 kb on + strand, within H281DRAFT_04289at 6.233 kb on + strand, within H281DRAFT_04289at 6.234 kb on - strand, within H281DRAFT_04289at 6.241 kb on - strand, within H281DRAFT_04289at 6.363 kb on - strandat 6.439 kb on - strandat 6.506 kb on - strandat 6.582 kb on + strand, within H281DRAFT_04290at 6.583 kb on - strand, within H281DRAFT_04290at 6.583 kb on - strand, within H281DRAFT_04290at 6.662 kb on - strand, within H281DRAFT_04290at 6.826 kb on + strand, within H281DRAFT_04290at 6.826 kb on + strand, within H281DRAFT_04290at 6.832 kb on + strand, within H281DRAFT_04290at 6.832 kb on + strand, within H281DRAFT_04290at 6.885 kb on - strandat 6.885 kb on - strandat 6.885 kb on - strandat 6.902 kb on - strandat 6.931 kb on + strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.946 kb on + strandat 6.946 kb on + strandat 7.024 kb on + strandat 7.024 kb on + strandat 7.025 kb on - strandat 7.025 kb on - strandat 7.057 kb on - strandat 7.184 kb on + strandat 7.184 kb on + strandat 7.185 kb on - strandat 7.185 kb on - strandat 7.185 kb on - strandat 7.196 kb on + strandat 7.196 kb on + strandat 7.197 kb on - strandat 7.197 kb on - strandat 7.197 kb on - strandat 7.200 kb on + strandat 7.200 kb on + strandat 7.200 kb on + strandat 7.201 kb on - strandat 7.212 kb on - strandat 7.225 kb on - strandat 7.451 kb on + strand, within H281DRAFT_04291at 7.451 kb on + strand, within H281DRAFT_04291at 7.451 kb on + strand, within H281DRAFT_04291at 7.451 kb on + strand, within H281DRAFT_04291at 7.452 kb on - strand, within H281DRAFT_04291at 7.452 kb on - strand, within H281DRAFT_04291at 7.486 kb on + strand, within H281DRAFT_04291at 7.486 kb on + strand, within H281DRAFT_04291at 7.486 kb on + strand, within H281DRAFT_04291at 7.487 kb on - strand, within H281DRAFT_04291at 7.487 kb on - strand, within H281DRAFT_04291at 7.487 kb on - strand, within H281DRAFT_04291at 7.487 kb on - strand, within H281DRAFT_04291at 7.506 kb on + strand, within H281DRAFT_04291at 7.568 kb on + strand, within H281DRAFT_04291at 7.666 kb on + strandat 7.666 kb on + strand, within H281DRAFT_04291at 7.666 kb on + strand, within H281DRAFT_04291at 7.666 kb on + strand, within H281DRAFT_04291at 7.667 kb on - strand, within H281DRAFT_04291at 7.667 kb on - strand, within H281DRAFT_04291at 7.667 kb on - strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.712 kb on - strand, within H281DRAFT_04291at 7.712 kb on - strand, within H281DRAFT_04291at 7.712 kb on - strand, within H281DRAFT_04291at 7.800 kb on + strand, within H281DRAFT_04291at 7.800 kb on + strand, within H281DRAFT_04291at 7.823 kb on + strand, within H281DRAFT_04291at 7.823 kb on + strand, within H281DRAFT_04291at 7.824 kb on - strand, within H281DRAFT_04291at 7.824 kb on - strand, within H281DRAFT_04291at 7.897 kb on + strand, within H281DRAFT_04291at 7.897 kb on + strand, within H281DRAFT_04291at 7.898 kb on - strand, within H281DRAFT_04291at 7.921 kb on - strand, within H281DRAFT_04291at 7.921 kb on - strand, within H281DRAFT_04291at 7.948 kb on + strand, within H281DRAFT_04291at 7.973 kb on + strand, within H281DRAFT_04291at 8.095 kb on + strand, within H281DRAFT_04291at 8.095 kb on + strand, within H281DRAFT_04291at 8.095 kb on + strand, within H281DRAFT_04291at 8.095 kb on + strand, within H281DRAFT_04291at 8.096 kb on - strand, within H281DRAFT_04291at 8.096 kb on - strand, within H281DRAFT_04291at 8.096 kb on - strand, within H281DRAFT_04291at 8.096 kb on - strand, within H281DRAFT_04291at 8.097 kb on + strand, within H281DRAFT_04291at 8.097 kb on + strand, within H281DRAFT_04291at 8.097 kb on + strand, within H281DRAFT_04291at 8.097 kb on + strand, within H281DRAFT_04291at 8.097 kb on + strand, within H281DRAFT_04291at 8.097 kb on + strand, within H281DRAFT_04291at 8.098 kb on - strand, within H281DRAFT_04291at 8.098 kb on - strand, within H281DRAFT_04291at 8.098 kb on - strand, within H281DRAFT_04291at 8.098 kb on - strand, within H281DRAFT_04291at 8.098 kb on - strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.099 kb on + strand, within H281DRAFT_04291at 8.100 kb on - strand, within H281DRAFT_04291at 8.100 kb on - strand, within H281DRAFT_04291at 8.100 kb on - strand, within H281DRAFT_04291at 8.100 kb on - strand, within H281DRAFT_04291at 8.100 kb on - strand, within H281DRAFT_04291at 8.100 kb on - strand, within H281DRAFT_04291at 8.101 kb on + strand, within H281DRAFT_04291at 8.101 kb on + strand, within H281DRAFT_04291at 8.101 kb on + strand, within H281DRAFT_04291at 8.101 kb on + strand, within H281DRAFT_04291at 8.102 kb on - strand, within H281DRAFT_04291at 8.102 kb on - strand, within H281DRAFT_04291at 8.102 kb on - strand, within H281DRAFT_04291at 8.303 kb on + strandat 8.311 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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6,233 + H281DRAFT_04289 0.82 +0.5
6,233 + H281DRAFT_04289 0.82 +0.5
6,234 - H281DRAFT_04289 0.82 -0.5
6,241 - H281DRAFT_04289 0.83 +0.1
6,363 - +0.8
6,439 - -0.4
6,506 - +0.3
6,582 + H281DRAFT_04290 0.26 +1.1
6,583 - H281DRAFT_04290 0.26 +0.2
6,583 - H281DRAFT_04290 0.26 -0.6
6,662 - H281DRAFT_04290 0.43 +0.4
6,826 + H281DRAFT_04290 0.78 -0.0
6,826 + H281DRAFT_04290 0.78 +0.5
6,832 + H281DRAFT_04290 0.79 -0.2
6,832 + H281DRAFT_04290 0.79 +1.1
6,885 - -0.4
6,885 - -0.5
6,885 - -0.5
6,902 - -0.6
6,931 + -0.1
6,932 - -0.4
6,932 - +0.1
6,932 - -0.6
6,932 - +0.0
6,932 - -0.4
6,932 - +0.9
6,932 - +0.0
6,946 + -0.1
6,946 + +0.1
7,024 + +0.4
7,024 + +1.1
7,025 - +0.8
7,025 - -0.1
7,057 - -0.3
7,184 + -0.6
7,184 + +0.1
7,185 - +0.0
7,185 - +0.5
7,185 - -0.2
7,196 + -0.0
7,196 + -0.5
7,197 - -0.4
7,197 - +0.6
7,197 - -0.9
7,200 + +0.3
7,200 + -0.2
7,200 + -0.5
7,201 - +1.1
7,212 - -0.8
7,225 - -0.6
7,451 + H281DRAFT_04291 0.24 +0.1
7,451 + H281DRAFT_04291 0.24 -0.3
7,451 + H281DRAFT_04291 0.24 -0.0
7,451 + H281DRAFT_04291 0.24 +0.4
7,452 - H281DRAFT_04291 0.24 -0.6
7,452 - H281DRAFT_04291 0.24 -0.6
7,486 + H281DRAFT_04291 0.27 +0.7
7,486 + H281DRAFT_04291 0.27 -0.0
7,486 + H281DRAFT_04291 0.27 +0.5
7,487 - H281DRAFT_04291 0.27 -0.4
7,487 - H281DRAFT_04291 0.27 -0.0
7,487 - H281DRAFT_04291 0.27 -0.2
7,487 - H281DRAFT_04291 0.27 +0.0
7,506 + H281DRAFT_04291 0.29 +1.1
7,568 + H281DRAFT_04291 0.34 +0.1
7,666 + +1.5
7,666 + H281DRAFT_04291 0.42 -0.3
7,666 + H281DRAFT_04291 0.42 +0.3
7,666 + H281DRAFT_04291 0.42 -0.4
7,667 - H281DRAFT_04291 0.42 +0.0
7,667 - H281DRAFT_04291 0.42 -0.2
7,667 - H281DRAFT_04291 0.42 +0.4
7,711 + H281DRAFT_04291 0.46 +0.6
7,711 + H281DRAFT_04291 0.46 -0.5
7,711 + H281DRAFT_04291 0.46 +2.4
7,711 + H281DRAFT_04291 0.46 -0.7
7,712 - H281DRAFT_04291 0.46 +0.7
7,712 - H281DRAFT_04291 0.46 +0.2
7,712 - H281DRAFT_04291 0.46 +0.8
7,800 + H281DRAFT_04291 0.54 +0.6
7,800 + H281DRAFT_04291 0.54 +0.2
7,823 + H281DRAFT_04291 0.56 +1.2
7,823 + H281DRAFT_04291 0.56 +0.0
7,824 - H281DRAFT_04291 0.56 +0.3
7,824 - H281DRAFT_04291 0.56 -0.8
7,897 + H281DRAFT_04291 0.62 +0.7
7,897 + H281DRAFT_04291 0.62 -0.2
7,898 - H281DRAFT_04291 0.62 -0.1
7,921 - H281DRAFT_04291 0.64 -0.7
7,921 - H281DRAFT_04291 0.64 +0.6
7,948 + H281DRAFT_04291 0.66 +1.1
7,973 + H281DRAFT_04291 0.69 -0.3
8,095 + H281DRAFT_04291 0.79 -0.6
8,095 + H281DRAFT_04291 0.79 +0.7
8,095 + H281DRAFT_04291 0.79 +0.1
8,095 + H281DRAFT_04291 0.79 +0.1
8,096 - H281DRAFT_04291 0.79 -0.4
8,096 - H281DRAFT_04291 0.79 +0.1
8,096 - H281DRAFT_04291 0.79 -0.2
8,096 - H281DRAFT_04291 0.79 -0.4
8,097 + H281DRAFT_04291 0.79 +0.0
8,097 + H281DRAFT_04291 0.79 +0.4
8,097 + H281DRAFT_04291 0.79 +0.9
8,097 + H281DRAFT_04291 0.79 -0.8
8,097 + H281DRAFT_04291 0.79 +0.2
8,097 + H281DRAFT_04291 0.79 -1.0
8,098 - H281DRAFT_04291 0.79 -0.3
8,098 - H281DRAFT_04291 0.79 -0.8
8,098 - H281DRAFT_04291 0.79 -0.7
8,098 - H281DRAFT_04291 0.79 -0.4
8,098 - H281DRAFT_04291 0.79 +0.7
8,099 + H281DRAFT_04291 0.79 -0.3
8,099 + H281DRAFT_04291 0.79 +0.2
8,099 + H281DRAFT_04291 0.79 -0.0
8,099 + H281DRAFT_04291 0.79 -0.0
8,099 + H281DRAFT_04291 0.79 -0.6
8,099 + H281DRAFT_04291 0.79 -0.9
8,099 + H281DRAFT_04291 0.79 -0.5
8,099 + H281DRAFT_04291 0.79 +0.1
8,099 + H281DRAFT_04291 0.79 -0.0
8,099 + H281DRAFT_04291 0.79 -0.3
8,099 + H281DRAFT_04291 0.79 +0.0
8,099 + H281DRAFT_04291 0.79 +0.4
8,099 + H281DRAFT_04291 0.79 +0.2
8,099 + H281DRAFT_04291 0.79 -0.1
8,100 - H281DRAFT_04291 0.79 -0.0
8,100 - H281DRAFT_04291 0.79 +0.0
8,100 - H281DRAFT_04291 0.79 +0.3
8,100 - H281DRAFT_04291 0.79 +0.1
8,100 - H281DRAFT_04291 0.79 -0.6
8,100 - H281DRAFT_04291 0.79 -0.4
8,101 + H281DRAFT_04291 0.79 +0.2
8,101 + H281DRAFT_04291 0.79 -0.3
8,101 + H281DRAFT_04291 0.79 +0.5
8,101 + H281DRAFT_04291 0.79 -0.1
8,102 - H281DRAFT_04291 0.80 -1.4
8,102 - H281DRAFT_04291 0.80 -0.1
8,102 - H281DRAFT_04291 0.80 -0.3
8,303 + -0.2
8,311 + -0.8

Or see this region's nucleotide sequence