Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03799

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03798 and H281DRAFT_03799 are separated by 16 nucleotidesH281DRAFT_03799 and H281DRAFT_03800 are separated by 37 nucleotides H281DRAFT_03798: H281DRAFT_03798 - NitT/TauT family transport system permease protein, at 319,127 to 319,990 _03798 H281DRAFT_03799: H281DRAFT_03799 - NitT/TauT family transport system ATP-binding protein, at 320,007 to 320,801 _03799 H281DRAFT_03800: H281DRAFT_03800 - NitT/TauT family transport system substrate-binding protein, at 320,839 to 321,858 _03800 Position (kb) 320 321Strain fitness (log2 ratio) -1 0 1 2 3at 319.443 kb on + strand, within H281DRAFT_03798at 320.789 kb on + strandat 320.789 kb on + strandat 320.885 kb on + strandat 321.048 kb on - strand, within H281DRAFT_03800at 321.050 kb on + strand, within H281DRAFT_03800at 321.411 kb on - strand, within H281DRAFT_03800at 321.588 kb on + strand, within H281DRAFT_03800at 321.610 kb on + strand, within H281DRAFT_03800

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
319,443 + H281DRAFT_03798 0.37 -1.7
320,789 + -1.3
320,789 + +3.1
320,885 + +0.1
321,048 - H281DRAFT_03800 0.20 +0.3
321,050 + H281DRAFT_03800 0.21 +1.1
321,411 - H281DRAFT_03800 0.56 -0.4
321,588 + H281DRAFT_03800 0.73 -0.7
321,610 + H281DRAFT_03800 0.76 -0.6

Or see this region's nucleotide sequence