Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03504 and H281DRAFT_03505 overlap by 4 nucleotides H281DRAFT_03505 and H281DRAFT_03506 are separated by 4 nucleotides
H281DRAFT_03504: H281DRAFT_03504 - phosphonoacetate hydrolase, at 588,326 to 589,603
_03504
H281DRAFT_03505: H281DRAFT_03505 - putative phosphonoacetaldehyde dehydrogenase, at 589,600 to 591,051
_03505
H281DRAFT_03506: H281DRAFT_03506 - phosphonate degradation operons associated HDIG domain protein, at 591,056 to 591,616
_03506
Position (kb) 589
590
591
592 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 588.605 kb on + strand, within H281DRAFT_03504 at 588.606 kb on - strand, within H281DRAFT_03504 at 588.669 kb on - strand, within H281DRAFT_03504 at 588.736 kb on + strand, within H281DRAFT_03504 at 588.841 kb on - strand, within H281DRAFT_03504 at 588.950 kb on + strand, within H281DRAFT_03504 at 588.951 kb on - strand, within H281DRAFT_03504 at 588.951 kb on - strand, within H281DRAFT_03504 at 588.973 kb on - strand, within H281DRAFT_03504 at 588.973 kb on - strand, within H281DRAFT_03504 at 588.973 kb on - strand, within H281DRAFT_03504 at 589.035 kb on - strand, within H281DRAFT_03504 at 589.137 kb on - strand, within H281DRAFT_03504 at 589.702 kb on + strand at 590.179 kb on + strand, within H281DRAFT_03505 at 590.447 kb on - strand, within H281DRAFT_03505 at 590.618 kb on + strand, within H281DRAFT_03505 at 590.804 kb on + strand, within H281DRAFT_03505 at 590.804 kb on + strand, within H281DRAFT_03505 at 590.805 kb on - strand, within H281DRAFT_03505 at 590.846 kb on + strand, within H281DRAFT_03505 at 590.846 kb on + strand, within H281DRAFT_03505 at 590.980 kb on + strand at 591.050 kb on - strand at 591.052 kb on + strand at 591.053 kb on - strand at 591.053 kb on - strand at 591.053 kb on - strand at 591.393 kb on - strand at 591.569 kb on + strand at 591.599 kb on - strand at 591.615 kb on - strand at 591.615 kb on - strand at 591.629 kb on + strand at 591.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 588,605 + H281DRAFT_03504 0.22 +0.5 588,606 - H281DRAFT_03504 0.22 +0.7 588,669 - H281DRAFT_03504 0.27 -0.6 588,736 + H281DRAFT_03504 0.32 +0.2 588,841 - H281DRAFT_03504 0.40 +0.4 588,950 + H281DRAFT_03504 0.49 +0.2 588,951 - H281DRAFT_03504 0.49 +0.1 588,951 - H281DRAFT_03504 0.49 -0.2 588,973 - H281DRAFT_03504 0.51 +0.8 588,973 - H281DRAFT_03504 0.51 +0.2 588,973 - H281DRAFT_03504 0.51 +0.1 589,035 - H281DRAFT_03504 0.55 +1.2 589,137 - H281DRAFT_03504 0.63 +0.3 589,702 + +0.8 590,179 + H281DRAFT_03505 0.40 +1.0 590,447 - H281DRAFT_03505 0.58 -0.1 590,618 + H281DRAFT_03505 0.70 +0.4 590,804 + H281DRAFT_03505 0.83 -0.6 590,804 + H281DRAFT_03505 0.83 -0.1 590,805 - H281DRAFT_03505 0.83 -0.2 590,846 + H281DRAFT_03505 0.86 +3.2 590,846 + H281DRAFT_03505 0.86 -2.5 590,980 + +0.3 591,050 - +0.2 591,052 + -0.3 591,053 - +0.2 591,053 - +0.5 591,053 - -1.4 591,393 - -1.6 591,569 + +0.6 591,599 - -1.0 591,615 - -0.0 591,615 - +0.4 591,629 + -0.4 591,630 - -0.0
Or see this region's nucleotide sequence