Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01780 and H281DRAFT_01781 are separated by 23 nucleotides H281DRAFT_01781 and H281DRAFT_01782 are separated by 54 nucleotides H281DRAFT_01782 and H281DRAFT_01783 are separated by 115 nucleotides H281DRAFT_01783 and H281DRAFT_01784 are separated by 117 nucleotides
H281DRAFT_01780: H281DRAFT_01780 - hypothetical protein, at 682,930 to 683,742
_01780
H281DRAFT_01781: H281DRAFT_01781 - hypothetical protein, at 683,766 to 684,332
_01781
H281DRAFT_01782: H281DRAFT_01782 - Predicted arabinose efflux permease, MFS family, at 684,387 to 685,697
_01782
H281DRAFT_01783: H281DRAFT_01783 - Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding, at 685,813 to 686,397
_01783
H281DRAFT_01784: H281DRAFT_01784 - Pimeloyl-ACP methyl ester carboxylesterase, at 686,515 to 687,387
_01784
Position (kb) 684
685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 683.723 kb on - strand at 683.741 kb on - strand at 683.741 kb on - strand at 683.760 kb on + strand at 683.760 kb on + strand at 684.226 kb on + strand, within H281DRAFT_01781 at 684.525 kb on + strand, within H281DRAFT_01782 at 684.692 kb on + strand, within H281DRAFT_01782 at 684.692 kb on + strand, within H281DRAFT_01782 at 684.693 kb on - strand, within H281DRAFT_01782 at 684.934 kb on + strand, within H281DRAFT_01782 at 685.356 kb on + strand, within H281DRAFT_01782 at 685.357 kb on - strand, within H281DRAFT_01782 at 685.711 kb on - strand at 685.929 kb on - strand, within H281DRAFT_01783 at 686.072 kb on + strand, within H281DRAFT_01783 at 686.072 kb on + strand, within H281DRAFT_01783 at 686.073 kb on - strand, within H281DRAFT_01783 at 686.073 kb on - strand, within H281DRAFT_01783 at 686.073 kb on - strand, within H281DRAFT_01783 at 686.276 kb on + strand, within H281DRAFT_01783 at 686.285 kb on - strand, within H281DRAFT_01783 at 686.647 kb on - strand, within H281DRAFT_01784
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 683,723 - +1.8 683,741 - -0.3 683,741 - -0.8 683,760 + -0.7 683,760 + -0.7 684,226 + H281DRAFT_01781 0.81 +0.9 684,525 + H281DRAFT_01782 0.11 +0.6 684,692 + H281DRAFT_01782 0.23 +0.1 684,692 + H281DRAFT_01782 0.23 -0.6 684,693 - H281DRAFT_01782 0.23 +0.8 684,934 + H281DRAFT_01782 0.42 -0.6 685,356 + H281DRAFT_01782 0.74 +1.5 685,357 - H281DRAFT_01782 0.74 +0.1 685,711 - -0.6 685,929 - H281DRAFT_01783 0.20 -1.0 686,072 + H281DRAFT_01783 0.44 -0.7 686,072 + H281DRAFT_01783 0.44 +0.1 686,073 - H281DRAFT_01783 0.44 -3.1 686,073 - H281DRAFT_01783 0.44 -1.6 686,073 - H281DRAFT_01783 0.44 -2.8 686,276 + H281DRAFT_01783 0.79 -0.6 686,285 - H281DRAFT_01783 0.81 -0.6 686,647 - H281DRAFT_01784 0.15 +0.6
Or see this region's nucleotide sequence