Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01779 and H281DRAFT_01780 are separated by 139 nucleotides H281DRAFT_01780 and H281DRAFT_01781 are separated by 23 nucleotides H281DRAFT_01781 and H281DRAFT_01782 are separated by 54 nucleotides
H281DRAFT_01779: H281DRAFT_01779 - DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains, at 681,414 to 682,790
_01779
H281DRAFT_01780: H281DRAFT_01780 - hypothetical protein, at 682,930 to 683,742
_01780
H281DRAFT_01781: H281DRAFT_01781 - hypothetical protein, at 683,766 to 684,332
_01781
H281DRAFT_01782: H281DRAFT_01782 - Predicted arabinose efflux permease, MFS family, at 684,387 to 685,697
_01782
Position (kb) 682
683
684 Strain fitness (log2 ratio) -1
0
1
2 at 682.201 kb on + strand, within H281DRAFT_01779 at 682.615 kb on + strand, within H281DRAFT_01779 at 682.615 kb on + strand, within H281DRAFT_01779 at 682.616 kb on - strand, within H281DRAFT_01779 at 682.709 kb on + strand at 682.867 kb on - strand at 682.889 kb on - strand at 683.229 kb on + strand, within H281DRAFT_01780 at 683.723 kb on - strand at 683.741 kb on - strand at 683.741 kb on - strand at 683.760 kb on + strand at 683.760 kb on + strand at 684.226 kb on + strand, within H281DRAFT_01781 at 684.525 kb on + strand, within H281DRAFT_01782 at 684.692 kb on + strand, within H281DRAFT_01782 at 684.692 kb on + strand, within H281DRAFT_01782 at 684.693 kb on - strand, within H281DRAFT_01782
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 682,201 + H281DRAFT_01779 0.57 -0.3 682,615 + H281DRAFT_01779 0.87 +1.7 682,615 + H281DRAFT_01779 0.87 +0.5 682,616 - H281DRAFT_01779 0.87 -0.1 682,709 + +0.2 682,867 - -0.4 682,889 - +0.2 683,229 + H281DRAFT_01780 0.37 -0.6 683,723 - +1.8 683,741 - -0.3 683,741 - -0.8 683,760 + -0.7 683,760 + -0.7 684,226 + H281DRAFT_01781 0.81 +0.9 684,525 + H281DRAFT_01782 0.11 +0.6 684,692 + H281DRAFT_01782 0.23 +0.1 684,692 + H281DRAFT_01782 0.23 -0.6 684,693 - H281DRAFT_01782 0.23 +0.8
Or see this region's nucleotide sequence