Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01667 and H281DRAFT_01668 are separated by 150 nucleotides H281DRAFT_01668 and H281DRAFT_01669 are separated by 308 nucleotides
H281DRAFT_01667: H281DRAFT_01667 - DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain, at 546,463 to 547,692
_01667
H281DRAFT_01668: H281DRAFT_01668 - gamma-aminobutyrate:proton symporter, AAT family, at 547,843 to 549,222
_01668
H281DRAFT_01669: H281DRAFT_01669 - NAD(P)H dehydrogenase (quinone), at 549,531 to 550,238
_01669
Position (kb) 547
548
549
550 Strain fitness (log2 ratio) -2
-1
0
1 at 546.887 kb on + strand, within H281DRAFT_01667 at 546.888 kb on - strand, within H281DRAFT_01667 at 546.888 kb on - strand, within H281DRAFT_01667 at 546.909 kb on - strand, within H281DRAFT_01667 at 547.562 kb on + strand, within H281DRAFT_01667 at 547.562 kb on + strand, within H281DRAFT_01667 at 547.562 kb on + strand, within H281DRAFT_01667 at 548.143 kb on - strand, within H281DRAFT_01668 at 548.645 kb on - strand, within H281DRAFT_01668 at 549.463 kb on - strand at 549.613 kb on + strand, within H281DRAFT_01669 at 549.614 kb on - strand, within H281DRAFT_01669 at 549.614 kb on - strand, within H281DRAFT_01669 at 549.614 kb on - strand, within H281DRAFT_01669 at 549.614 kb on - strand, within H281DRAFT_01669 at 549.614 kb on - strand, within H281DRAFT_01669 at 549.785 kb on + strand, within H281DRAFT_01669 at 549.959 kb on + strand, within H281DRAFT_01669 at 550.045 kb on + strand, within H281DRAFT_01669 at 550.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 546,887 + H281DRAFT_01667 0.34 -0.8 546,888 - H281DRAFT_01667 0.35 +0.2 546,888 - H281DRAFT_01667 0.35 -1.1 546,909 - H281DRAFT_01667 0.36 +0.2 547,562 + H281DRAFT_01667 0.89 -0.4 547,562 + H281DRAFT_01667 0.89 -0.3 547,562 + H281DRAFT_01667 0.89 -0.3 548,143 - H281DRAFT_01668 0.22 +0.1 548,645 - H281DRAFT_01668 0.58 +0.2 549,463 - +0.5 549,613 + H281DRAFT_01669 0.12 -1.1 549,614 - H281DRAFT_01669 0.12 -0.5 549,614 - H281DRAFT_01669 0.12 -0.0 549,614 - H281DRAFT_01669 0.12 -0.2 549,614 - H281DRAFT_01669 0.12 +0.0 549,614 - H281DRAFT_01669 0.12 -0.4 549,785 + H281DRAFT_01669 0.36 +0.2 549,959 + H281DRAFT_01669 0.60 -0.5 550,045 + H281DRAFT_01669 0.73 -2.0 550,118 - +1.0
Or see this region's nucleotide sequence