Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01373 and H281DRAFT_01374 are separated by 307 nucleotides H281DRAFT_01374 and H281DRAFT_01375 overlap by 4 nucleotides
H281DRAFT_01373: H281DRAFT_01373 - protocatechuate 4,5-dioxygenase beta subunit (EC 1.13.11.8), at 217,758 to 218,603
_01373
H281DRAFT_01374: H281DRAFT_01374 - transcriptional regulator, GntR family, at 218,911 to 219,705
_01374
H281DRAFT_01375: H281DRAFT_01375 - LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway, at 219,702 to 221,024
_01375
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1 at 217.915 kb on + strand, within H281DRAFT_01373 at 218.463 kb on - strand, within H281DRAFT_01373 at 218.494 kb on + strand, within H281DRAFT_01373 at 218.534 kb on + strand at 218.546 kb on - strand at 218.559 kb on - strand at 218.773 kb on - strand at 218.909 kb on - strand at 219.199 kb on - strand at 219.201 kb on - strand, within H281DRAFT_01374 at 219.227 kb on + strand, within H281DRAFT_01374 at 219.554 kb on - strand, within H281DRAFT_01374 at 219.934 kb on + strand, within H281DRAFT_01375 at 220.012 kb on + strand, within H281DRAFT_01375 at 220.149 kb on - strand, within H281DRAFT_01375 at 220.149 kb on - strand, within H281DRAFT_01375 at 220.149 kb on - strand, within H281DRAFT_01375 at 220.483 kb on - strand, within H281DRAFT_01375
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 217,915 + H281DRAFT_01373 0.19 -1.1 218,463 - H281DRAFT_01373 0.83 -0.8 218,494 + H281DRAFT_01373 0.87 -0.4 218,534 + -0.3 218,546 - +0.2 218,559 - +0.2 218,773 - -2.2 218,909 - -0.2 219,199 - +1.0 219,201 - H281DRAFT_01374 0.36 -0.6 219,227 + H281DRAFT_01374 0.40 -0.2 219,554 - H281DRAFT_01374 0.81 +0.3 219,934 + H281DRAFT_01375 0.18 +0.7 220,012 + H281DRAFT_01375 0.23 -0.1 220,149 - H281DRAFT_01375 0.34 -0.4 220,149 - H281DRAFT_01375 0.34 -0.2 220,149 - H281DRAFT_01375 0.34 -1.4 220,483 - H281DRAFT_01375 0.59 -0.8
Or see this region's nucleotide sequence