Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01372

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01371 and H281DRAFT_01372 are separated by 107 nucleotidesH281DRAFT_01372 and H281DRAFT_01373 overlap by 4 nucleotides H281DRAFT_01371: H281DRAFT_01371 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 215,951 to 217,294 _01371 H281DRAFT_01372: H281DRAFT_01372 - protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8), at 217,402 to 217,761 _01372 H281DRAFT_01373: H281DRAFT_01373 - protocatechuate 4,5-dioxygenase beta subunit (EC 1.13.11.8), at 217,758 to 218,603 _01373 Position (kb) 217 218Strain fitness (log2 ratio) -1 0 1at 216.650 kb on - strand, within H281DRAFT_01371at 217.470 kb on - strand, within H281DRAFT_01372at 217.514 kb on - strand, within H281DRAFT_01372at 217.718 kb on + strand, within H281DRAFT_01372at 217.915 kb on + strand, within H281DRAFT_01373at 218.463 kb on - strand, within H281DRAFT_01373at 218.494 kb on + strand, within H281DRAFT_01373at 218.534 kb on + strandat 218.546 kb on - strandat 218.559 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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216,650 - H281DRAFT_01371 0.52 -0.6
217,470 - H281DRAFT_01372 0.19 -1.2
217,514 - H281DRAFT_01372 0.31 +0.4
217,718 + H281DRAFT_01372 0.88 -0.2
217,915 + H281DRAFT_01373 0.19 -1.1
218,463 - H281DRAFT_01373 0.83 -0.8
218,494 + H281DRAFT_01373 0.87 -0.4
218,534 + -0.3
218,546 - +0.2
218,559 - +0.2

Or see this region's nucleotide sequence