Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01228 and H281DRAFT_01229 are separated by 50 nucleotides H281DRAFT_01229 and H281DRAFT_01230 are separated by 113 nucleotides
H281DRAFT_01228: H281DRAFT_01228 - L-rhamnonate dehydratase, at 65,898 to 67,076
_01228
H281DRAFT_01229: H281DRAFT_01229 - Sugar phosphate permease, at 67,127 to 68,452
_01229
H281DRAFT_01230: H281DRAFT_01230 - 3-oxoacyl-[acyl-carrier protein] reductase, at 68,566 to 69,318
_01230
Position (kb) 67
68
69 Strain fitness (log2 ratio) -1
0
1 at 66.440 kb on - strand, within H281DRAFT_01228 at 66.602 kb on - strand, within H281DRAFT_01228 at 66.637 kb on - strand, within H281DRAFT_01228 at 66.708 kb on - strand, within H281DRAFT_01228 at 66.749 kb on - strand, within H281DRAFT_01228 at 66.751 kb on + strand, within H281DRAFT_01228 at 66.752 kb on - strand, within H281DRAFT_01228 at 67.298 kb on - strand, within H281DRAFT_01229 at 67.695 kb on + strand, within H281DRAFT_01229 at 68.571 kb on - strand at 68.705 kb on + strand, within H281DRAFT_01230 at 68.705 kb on + strand, within H281DRAFT_01230 at 68.818 kb on + strand, within H281DRAFT_01230 at 68.975 kb on - strand, within H281DRAFT_01230 at 69.362 kb on - strand at 69.395 kb on + strand at 69.397 kb on + strand at 69.397 kb on + strand at 69.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 66,440 - H281DRAFT_01228 0.46 -0.7 66,602 - H281DRAFT_01228 0.60 -0.1 66,637 - H281DRAFT_01228 0.63 -0.2 66,708 - H281DRAFT_01228 0.69 -0.3 66,749 - H281DRAFT_01228 0.72 +0.0 66,751 + H281DRAFT_01228 0.72 -0.3 66,752 - H281DRAFT_01228 0.72 -0.3 67,298 - H281DRAFT_01229 0.13 +1.6 67,695 + H281DRAFT_01229 0.43 +0.6 68,571 - +0.9 68,705 + H281DRAFT_01230 0.18 -1.1 68,705 + H281DRAFT_01230 0.18 -0.4 68,818 + H281DRAFT_01230 0.33 -0.6 68,975 - H281DRAFT_01230 0.54 -0.2 69,362 - +0.1 69,395 + -0.5 69,397 + +0.2 69,397 + +0.1 69,398 - -0.1
Or see this region's nucleotide sequence