Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00992 and H281DRAFT_00993 are separated by 17 nucleotides H281DRAFT_00993 and H281DRAFT_00994 are separated by 67 nucleotides
H281DRAFT_00992: H281DRAFT_00992 - Glycine/D-amino acid oxidase (deaminating), at 1,113,505 to 1,114,836
_00992
H281DRAFT_00993: H281DRAFT_00993 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase, at 1,114,854 to 1,116,347
_00993
H281DRAFT_00994: H281DRAFT_00994 - pyrroline-5-carboxylate reductase, at 1,116,415 to 1,117,185
_00994
Position (kb) 1114
1115
1116
1117 Strain fitness (log2 ratio) -1
0
1
2 at 1113.978 kb on + strand, within H281DRAFT_00992 at 1114.026 kb on - strand, within H281DRAFT_00992 at 1114.026 kb on - strand, within H281DRAFT_00992 at 1114.042 kb on + strand, within H281DRAFT_00992 at 1114.848 kb on + strand at 1114.864 kb on - strand at 1115.096 kb on + strand, within H281DRAFT_00993 at 1115.483 kb on - strand, within H281DRAFT_00993 at 1115.813 kb on - strand, within H281DRAFT_00993 at 1115.950 kb on + strand, within H281DRAFT_00993 at 1116.052 kb on + strand, within H281DRAFT_00993 at 1116.294 kb on + strand at 1116.356 kb on + strand at 1117.008 kb on - strand, within H281DRAFT_00994 at 1117.126 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,113,978 + H281DRAFT_00992 0.36 +0.2 1,114,026 - H281DRAFT_00992 0.39 +0.0 1,114,026 - H281DRAFT_00992 0.39 -0.4 1,114,042 + H281DRAFT_00992 0.40 +0.1 1,114,848 + +0.3 1,114,864 - -1.1 1,115,096 + H281DRAFT_00993 0.16 +0.1 1,115,483 - H281DRAFT_00993 0.42 -0.6 1,115,813 - H281DRAFT_00993 0.64 +1.5 1,115,950 + H281DRAFT_00993 0.73 +0.3 1,116,052 + H281DRAFT_00993 0.80 +0.4 1,116,294 + -0.4 1,116,356 + +0.9 1,117,008 - H281DRAFT_00994 0.77 +2.4 1,117,126 + +0.0
Or see this region's nucleotide sequence