Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00810

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00809 and H281DRAFT_00810 are separated by 161 nucleotidesH281DRAFT_00810 and H281DRAFT_00811 are separated by 8 nucleotides H281DRAFT_00809: H281DRAFT_00809 - alanine-synthesizing transaminase, at 897,280 to 898,584 _00809 H281DRAFT_00810: H281DRAFT_00810 - homoserine dehydrogenase, at 898,746 to 900,077 _00810 H281DRAFT_00811: H281DRAFT_00811 - L-threonine synthase, at 900,086 to 901,537 _00811 Position (kb) 898 899 900 901Strain fitness (log2 ratio) -2 -1 0 1at 897.781 kb on + strand, within H281DRAFT_00809at 897.781 kb on + strand, within H281DRAFT_00809at 897.781 kb on + strand, within H281DRAFT_00809at 897.898 kb on + strand, within H281DRAFT_00809at 897.973 kb on + strand, within H281DRAFT_00809at 897.973 kb on + strand, within H281DRAFT_00809at 898.005 kb on + strand, within H281DRAFT_00809at 898.069 kb on + strand, within H281DRAFT_00809at 898.234 kb on + strand, within H281DRAFT_00809at 898.354 kb on + strand, within H281DRAFT_00809at 898.592 kb on + strandat 900.075 kb on + strandat 900.085 kb on + strandat 900.085 kb on + strandat 900.085 kb on + strandat 900.085 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
897,781 + H281DRAFT_00809 0.38 -1.8
897,781 + H281DRAFT_00809 0.38 -0.0
897,781 + H281DRAFT_00809 0.38 +0.7
897,898 + H281DRAFT_00809 0.47 -1.0
897,973 + H281DRAFT_00809 0.53 -0.5
897,973 + H281DRAFT_00809 0.53 -0.2
898,005 + H281DRAFT_00809 0.56 -1.0
898,069 + H281DRAFT_00809 0.60 -0.4
898,234 + H281DRAFT_00809 0.73 -0.8
898,354 + H281DRAFT_00809 0.82 +0.6
898,592 + +0.3
900,075 + +0.2
900,085 + -0.3
900,085 + -1.3
900,085 + -0.6
900,085 + -0.2

Or see this region's nucleotide sequence