Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00784 and H281DRAFT_00785 are separated by 558 nucleotides H281DRAFT_00785 and H281DRAFT_00786 are separated by 105 nucleotides
H281DRAFT_00784: H281DRAFT_00784 - Nucleoid-associated protein YgaU, contains BON and LysM domains, at 870,783 to 871,277
_00784
H281DRAFT_00785: H281DRAFT_00785 - 2-hydroxy-3-oxopropionate reductase, at 871,836 to 872,744
_00785
H281DRAFT_00786: H281DRAFT_00786 - hydroxypyruvate isomerase, at 872,850 to 873,659
_00786
Position (kb) 871
872
873 Strain fitness (log2 ratio) -1
0
1
2 at 870.892 kb on + strand, within H281DRAFT_00784 at 870.892 kb on + strand, within H281DRAFT_00784 at 870.893 kb on - strand, within H281DRAFT_00784 at 870.969 kb on + strand, within H281DRAFT_00784 at 871.094 kb on - strand, within H281DRAFT_00784 at 871.094 kb on - strand, within H281DRAFT_00784 at 871.121 kb on + strand, within H281DRAFT_00784 at 871.138 kb on + strand, within H281DRAFT_00784 at 871.139 kb on - strand, within H281DRAFT_00784 at 871.272 kb on - strand at 871.299 kb on + strand at 871.418 kb on + strand at 871.426 kb on - strand at 871.767 kb on - strand at 871.951 kb on - strand, within H281DRAFT_00785 at 871.992 kb on + strand, within H281DRAFT_00785 at 872.280 kb on - strand, within H281DRAFT_00785 at 872.280 kb on - strand, within H281DRAFT_00785 at 872.939 kb on - strand, within H281DRAFT_00786 at 872.962 kb on + strand, within H281DRAFT_00786 at 873.130 kb on + strand, within H281DRAFT_00786 at 873.217 kb on + strand, within H281DRAFT_00786 at 873.237 kb on + strand, within H281DRAFT_00786 at 873.238 kb on - strand, within H281DRAFT_00786
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 870,892 + H281DRAFT_00784 0.22 +0.3 870,892 + H281DRAFT_00784 0.22 -0.9 870,893 - H281DRAFT_00784 0.22 -0.0 870,969 + H281DRAFT_00784 0.38 +0.7 871,094 - H281DRAFT_00784 0.63 -0.2 871,094 - H281DRAFT_00784 0.63 +0.1 871,121 + H281DRAFT_00784 0.68 -0.8 871,138 + H281DRAFT_00784 0.72 -0.0 871,139 - H281DRAFT_00784 0.72 -0.6 871,272 - -0.6 871,299 + -0.5 871,418 + +0.5 871,426 - +0.5 871,767 - +0.1 871,951 - H281DRAFT_00785 0.13 -0.2 871,992 + H281DRAFT_00785 0.17 +0.6 872,280 - H281DRAFT_00785 0.49 +0.0 872,280 - H281DRAFT_00785 0.49 +0.1 872,939 - H281DRAFT_00786 0.11 +0.5 872,962 + H281DRAFT_00786 0.14 -0.2 873,130 + H281DRAFT_00786 0.35 -0.7 873,217 + H281DRAFT_00786 0.45 -0.2 873,237 + H281DRAFT_00786 0.48 +1.8 873,238 - H281DRAFT_00786 0.48 -0.5
Or see this region's nucleotide sequence