Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00074 and H281DRAFT_00075 are separated by 12 nucleotides H281DRAFT_00075 and H281DRAFT_00076 are separated by 53 nucleotides H281DRAFT_00076 and H281DRAFT_00077 overlap by 4 nucleotides
H281DRAFT_00074: H281DRAFT_00074 - UDP-galactose 4-epimerase, at 74,787 to 75,809
_00074
H281DRAFT_00075: H281DRAFT_00075 - Glycosyltransferase involved in cell wall bisynthesis, at 75,822 to 76,970
_00075
H281DRAFT_00076: H281DRAFT_00076 - Glycosyltransferase involved in cell wall bisynthesis, at 77,024 to 77,857
_00076
H281DRAFT_00077: H281DRAFT_00077 - polysaccharide transporter, PST family, at 77,854 to 79,116
_00077
Position (kb) 75
76
77 Strain fitness (log2 ratio) -2
-1
0
1 at 75.101 kb on + strand, within H281DRAFT_00074 at 75.102 kb on - strand, within H281DRAFT_00074 at 75.102 kb on - strand, within H281DRAFT_00074 at 75.193 kb on + strand, within H281DRAFT_00074 at 75.416 kb on - strand, within H281DRAFT_00074 at 75.509 kb on - strand, within H281DRAFT_00074 at 75.693 kb on - strand, within H281DRAFT_00074 at 75.693 kb on - strand, within H281DRAFT_00074 at 75.824 kb on - strand at 76.164 kb on + strand, within H281DRAFT_00075 at 76.657 kb on + strand, within H281DRAFT_00075 at 76.730 kb on - strand, within H281DRAFT_00075 at 76.901 kb on - strand at 76.919 kb on + strand at 76.931 kb on + strand at 77.127 kb on + strand, within H281DRAFT_00076
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 75,101 + H281DRAFT_00074 0.31 +0.4 75,102 - H281DRAFT_00074 0.31 -0.8 75,102 - H281DRAFT_00074 0.31 -1.8 75,193 + H281DRAFT_00074 0.40 -0.2 75,416 - H281DRAFT_00074 0.61 +1.0 75,509 - H281DRAFT_00074 0.71 -2.0 75,693 - H281DRAFT_00074 0.89 +0.2 75,693 - H281DRAFT_00074 0.89 -0.6 75,824 - +0.3 76,164 + H281DRAFT_00075 0.30 -1.8 76,657 + H281DRAFT_00075 0.73 -1.9 76,730 - H281DRAFT_00075 0.79 +0.1 76,901 - -0.8 76,919 + +0.5 76,931 + -0.2 77,127 + H281DRAFT_00076 0.12 -1.3
Or see this region's nucleotide sequence