Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06188 and H281DRAFT_06189 overlap by 35 nucleotides H281DRAFT_06189 and H281DRAFT_06190 overlap by 4 nucleotides H281DRAFT_06190 and H281DRAFT_06191 are separated by 115 nucleotides
H281DRAFT_06188: H281DRAFT_06188 - Site-specific recombinase XerD, at 78,422 to 79,405
_06188
H281DRAFT_06189: H281DRAFT_06189 - nucleoside deoxyribosyltransferase, at 79,371 to 79,961
_06189
H281DRAFT_06190: H281DRAFT_06190 - DNA-binding protein H-NS, at 79,958 to 80,242
_06190
H281DRAFT_06191: H281DRAFT_06191 - hypothetical protein, at 80,358 to 80,807
_06191
Position (kb) 79
80 Strain fitness (log2 ratio) -2
-1
0
1 at 78.544 kb on + strand, within H281DRAFT_06188 at 78.873 kb on - strand, within H281DRAFT_06188 at 78.927 kb on + strand at 78.928 kb on - strand, within H281DRAFT_06188 at 79.296 kb on + strand, within H281DRAFT_06188 at 79.297 kb on - strand, within H281DRAFT_06188 at 79.340 kb on - strand at 79.354 kb on + strand at 79.355 kb on - strand at 79.355 kb on - strand at 79.355 kb on - strand at 79.355 kb on - strand at 79.356 kb on + strand at 79.356 kb on + strand at 79.357 kb on - strand at 79.357 kb on - strand at 79.358 kb on + strand at 79.358 kb on + strand at 79.457 kb on + strand, within H281DRAFT_06189 at 79.457 kb on + strand, within H281DRAFT_06189 at 79.457 kb on + strand, within H281DRAFT_06189 at 79.457 kb on + strand, within H281DRAFT_06189 at 79.457 kb on + strand, within H281DRAFT_06189 at 79.457 kb on + strand, within H281DRAFT_06189 at 79.458 kb on - strand, within H281DRAFT_06189 at 79.458 kb on - strand, within H281DRAFT_06189 at 79.594 kb on - strand, within H281DRAFT_06189 at 79.628 kb on - strand, within H281DRAFT_06189 at 79.716 kb on + strand, within H281DRAFT_06189 at 79.769 kb on - strand, within H281DRAFT_06189 at 79.829 kb on - strand, within H281DRAFT_06189 at 79.921 kb on + strand at 80.055 kb on + strand, within H281DRAFT_06190 at 80.230 kb on + strand at 80.230 kb on + strand at 80.230 kb on + strand at 80.232 kb on + strand at 80.233 kb on - strand at 80.264 kb on - strand at 80.278 kb on + strand at 80.278 kb on + strand at 80.353 kb on + strand at 80.354 kb on - strand at 80.354 kb on - strand at 80.660 kb on + strand, within H281DRAFT_06191 at 80.661 kb on - strand, within H281DRAFT_06191 at 80.687 kb on + strand, within H281DRAFT_06191 at 80.688 kb on - strand, within H281DRAFT_06191 at 80.688 kb on - strand, within H281DRAFT_06191 at 80.691 kb on + strand, within H281DRAFT_06191 at 80.692 kb on - strand, within H281DRAFT_06191 at 80.692 kb on - strand, within H281DRAFT_06191 at 80.705 kb on - strand, within H281DRAFT_06191
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 78,544 + H281DRAFT_06188 0.12 +0.3 78,873 - H281DRAFT_06188 0.46 -0.3 78,927 + -0.3 78,928 - H281DRAFT_06188 0.51 +0.3 79,296 + H281DRAFT_06188 0.89 +0.0 79,297 - H281DRAFT_06188 0.89 +0.5 79,340 - -1.0 79,354 + -1.0 79,355 - +0.2 79,355 - +1.3 79,355 - -0.3 79,355 - +0.0 79,356 + +0.0 79,356 + -0.5 79,357 - -0.2 79,357 - -0.7 79,358 + +0.2 79,358 + -0.1 79,457 + H281DRAFT_06189 0.15 -0.2 79,457 + H281DRAFT_06189 0.15 -0.0 79,457 + H281DRAFT_06189 0.15 -0.1 79,457 + H281DRAFT_06189 0.15 +0.2 79,457 + H281DRAFT_06189 0.15 -1.8 79,457 + H281DRAFT_06189 0.15 +0.0 79,458 - H281DRAFT_06189 0.15 -0.2 79,458 - H281DRAFT_06189 0.15 -0.3 79,594 - H281DRAFT_06189 0.38 -0.7 79,628 - H281DRAFT_06189 0.43 +1.3 79,716 + H281DRAFT_06189 0.58 +0.3 79,769 - H281DRAFT_06189 0.67 -0.2 79,829 - H281DRAFT_06189 0.77 +0.7 79,921 + -0.6 80,055 + H281DRAFT_06190 0.34 -0.8 80,230 + +0.3 80,230 + -0.2 80,230 + -0.8 80,232 + +0.1 80,233 - +0.2 80,264 - +0.1 80,278 + -0.7 80,278 + +0.0 80,353 + -0.5 80,354 - -0.2 80,354 - +0.1 80,660 + H281DRAFT_06191 0.67 -0.7 80,661 - H281DRAFT_06191 0.67 -1.4 80,687 + H281DRAFT_06191 0.73 +0.4 80,688 - H281DRAFT_06191 0.73 -0.3 80,688 - H281DRAFT_06191 0.73 +0.6 80,691 + H281DRAFT_06191 0.74 +0.2 80,692 - H281DRAFT_06191 0.74 +0.1 80,692 - H281DRAFT_06191 0.74 +0.3 80,705 - H281DRAFT_06191 0.77 -0.0
Or see this region's nucleotide sequence