Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05942

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05941 and H281DRAFT_05942 are separated by 99 nucleotidesH281DRAFT_05942 and H281DRAFT_05943 are separated by 161 nucleotides H281DRAFT_05941: H281DRAFT_05941 - Glycosyltransferase involved in cell wall bisynthesis, at 80,652 to 81,611 _05941 H281DRAFT_05942: H281DRAFT_05942 - transcriptional regulator, LysR family, at 81,711 to 82,562 _05942 H281DRAFT_05943: H281DRAFT_05943 - Permease of the drug/metabolite transporter (DMT) superfamily, at 82,724 to 83,593 _05943 Position (kb) 81 82 83Strain fitness (log2 ratio) -1 0 1 2 3 4at 80.839 kb on - strand, within H281DRAFT_05941at 81.530 kb on + strandat 81.624 kb on - strandat 82.043 kb on - strand, within H281DRAFT_05942at 82.043 kb on - strand, within H281DRAFT_05942at 82.084 kb on - strand, within H281DRAFT_05942at 82.232 kb on + strand, within H281DRAFT_05942at 82.233 kb on - strand, within H281DRAFT_05942at 82.255 kb on + strand, within H281DRAFT_05942at 82.786 kb on - strandat 83.004 kb on + strand, within H281DRAFT_05943at 83.274 kb on + strand, within H281DRAFT_05943

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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80,839 - H281DRAFT_05941 0.19 -0.0
81,530 + -0.5
81,624 - -0.4
82,043 - H281DRAFT_05942 0.39 -0.1
82,043 - H281DRAFT_05942 0.39 +0.3
82,084 - H281DRAFT_05942 0.44 +1.0
82,232 + H281DRAFT_05942 0.61 -0.2
82,233 - H281DRAFT_05942 0.61 +4.3
82,255 + H281DRAFT_05942 0.64 +0.2
82,786 - -1.0
83,004 + H281DRAFT_05943 0.32 -1.3
83,274 + H281DRAFT_05943 0.63 +0.4

Or see this region's nucleotide sequence