Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05882 and H281DRAFT_05883 are separated by 236 nucleotides H281DRAFT_05883 and H281DRAFT_05884 are separated by 121 nucleotides H281DRAFT_05884 and H281DRAFT_05885 are separated by 40 nucleotides
H281DRAFT_05882: H281DRAFT_05882 - amino acid ABC transporter substrate-binding protein, PAAT family, at 20,652 to 21,440
_05882
H281DRAFT_05883: H281DRAFT_05883 - ornithine cyclodeaminase (EC 4.3.1.12), at 21,677 to 22,648
_05883
H281DRAFT_05884: H281DRAFT_05884 - Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains, at 22,770 to 23,414
_05884
H281DRAFT_05885: H281DRAFT_05885 - dihydroxyacetone kinase DhaK subunit, at 23,455 to 24,444
_05885
Position (kb) 21
22
23 Strain fitness (log2 ratio) -1
0
1
2 at 20.930 kb on - strand, within H281DRAFT_05882 at 21.102 kb on + strand, within H281DRAFT_05882 at 21.103 kb on - strand, within H281DRAFT_05882 at 21.797 kb on - strand, within H281DRAFT_05883 at 22.285 kb on + strand, within H281DRAFT_05883 at 22.285 kb on + strand at 22.646 kb on + strand at 22.647 kb on - strand at 22.905 kb on + strand, within H281DRAFT_05884 at 23.075 kb on - strand, within H281DRAFT_05884 at 23.094 kb on + strand, within H281DRAFT_05884 at 23.095 kb on - strand at 23.131 kb on + strand, within H281DRAFT_05884 at 23.162 kb on + strand, within H281DRAFT_05884 at 23.163 kb on - strand, within H281DRAFT_05884 at 23.179 kb on + strand, within H281DRAFT_05884 at 23.337 kb on + strand, within H281DRAFT_05884 at 23.337 kb on + strand, within H281DRAFT_05884
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 20,930 - H281DRAFT_05882 0.35 +0.2 21,102 + H281DRAFT_05882 0.57 -0.6 21,103 - H281DRAFT_05882 0.57 -0.5 21,797 - H281DRAFT_05883 0.12 +2.6 22,285 + H281DRAFT_05883 0.63 -0.1 22,285 + +0.4 22,646 + +0.5 22,647 - +0.2 22,905 + H281DRAFT_05884 0.21 +0.8 23,075 - H281DRAFT_05884 0.47 -1.0 23,094 + H281DRAFT_05884 0.50 -0.1 23,095 - -0.6 23,131 + H281DRAFT_05884 0.56 -0.8 23,162 + H281DRAFT_05884 0.61 +0.6 23,163 - H281DRAFT_05884 0.61 -1.4 23,179 + H281DRAFT_05884 0.63 -0.5 23,337 + H281DRAFT_05884 0.88 +0.4 23,337 + H281DRAFT_05884 0.88 -1.0
Or see this region's nucleotide sequence