Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05777 and H281DRAFT_05778 overlap by 4 nucleotides H281DRAFT_05778 and H281DRAFT_05779 overlap by 8 nucleotides H281DRAFT_05779 and H281DRAFT_05780 are separated by 64 nucleotides H281DRAFT_05780 and H281DRAFT_05781 are separated by 248 nucleotides
H281DRAFT_05777: H281DRAFT_05777 - flagellar protein FliO/FliZ, at 50,936 to 51,547
_05777
H281DRAFT_05778: H281DRAFT_05778 - flagellar motor switch protein FliN/FliY, at 51,544 to 52,011
_05778
H281DRAFT_05779: H281DRAFT_05779 - flagellar motor switch protein FliM, at 52,004 to 53,002
_05779
H281DRAFT_05780: H281DRAFT_05780 - flagellar FliL protein, at 53,067 to 53,564
_05780
H281DRAFT_05781: H281DRAFT_05781 - flagellar hook-length control protein FliK, at 53,813 to 55,366
_05781
Position (kb) 52
53
54 Strain fitness (log2 ratio) -1
0
1
2 at 51.050 kb on - strand, within H281DRAFT_05777 at 51.050 kb on - strand, within H281DRAFT_05777 at 51.124 kb on + strand, within H281DRAFT_05777 at 51.124 kb on + strand, within H281DRAFT_05777 at 51.579 kb on + strand at 51.580 kb on - strand at 51.580 kb on - strand at 51.600 kb on + strand, within H281DRAFT_05778 at 52.195 kb on + strand, within H281DRAFT_05779 at 52.195 kb on + strand, within H281DRAFT_05779 at 52.195 kb on + strand, within H281DRAFT_05779 at 52.195 kb on + strand, within H281DRAFT_05779 at 52.467 kb on + strand, within H281DRAFT_05779 at 52.468 kb on - strand, within H281DRAFT_05779 at 52.510 kb on - strand, within H281DRAFT_05779 at 52.510 kb on - strand, within H281DRAFT_05779 at 52.510 kb on - strand, within H281DRAFT_05779 at 52.737 kb on + strand, within H281DRAFT_05779 at 52.737 kb on + strand, within H281DRAFT_05779 at 52.890 kb on + strand, within H281DRAFT_05779 at 52.898 kb on + strand, within H281DRAFT_05779 at 52.898 kb on + strand, within H281DRAFT_05779 at 52.898 kb on + strand, within H281DRAFT_05779 at 52.899 kb on - strand, within H281DRAFT_05779 at 52.899 kb on - strand, within H281DRAFT_05779 at 52.905 kb on - strand at 53.007 kb on + strand at 53.559 kb on - strand at 53.586 kb on - strand at 53.597 kb on + strand at 53.647 kb on + strand at 53.647 kb on + strand at 53.647 kb on + strand at 53.657 kb on + strand at 53.657 kb on + strand at 53.658 kb on - strand at 53.658 kb on - strand at 53.664 kb on - strand at 53.824 kb on + strand at 53.825 kb on - strand at 53.825 kb on - strand at 53.914 kb on + strand at 53.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 51,050 - H281DRAFT_05777 0.19 -0.2 51,050 - H281DRAFT_05777 0.19 -0.3 51,124 + H281DRAFT_05777 0.31 +0.9 51,124 + H281DRAFT_05777 0.31 +1.4 51,579 + -0.1 51,580 - +1.0 51,580 - -1.0 51,600 + H281DRAFT_05778 0.12 +0.8 52,195 + H281DRAFT_05779 0.19 +1.5 52,195 + H281DRAFT_05779 0.19 +0.8 52,195 + H281DRAFT_05779 0.19 +1.1 52,195 + H281DRAFT_05779 0.19 +0.8 52,467 + H281DRAFT_05779 0.46 +0.7 52,468 - H281DRAFT_05779 0.46 +1.0 52,510 - H281DRAFT_05779 0.51 +0.3 52,510 - H281DRAFT_05779 0.51 +0.7 52,510 - H281DRAFT_05779 0.51 -0.1 52,737 + H281DRAFT_05779 0.73 +1.1 52,737 + H281DRAFT_05779 0.73 +1.0 52,890 + H281DRAFT_05779 0.89 +1.6 52,898 + H281DRAFT_05779 0.89 +1.0 52,898 + H281DRAFT_05779 0.89 +1.0 52,898 + H281DRAFT_05779 0.89 +1.7 52,899 - H281DRAFT_05779 0.90 +0.2 52,899 - H281DRAFT_05779 0.90 +0.8 52,905 - +1.0 53,007 + +2.0 53,559 - +0.5 53,586 - -0.2 53,597 + +0.7 53,647 + +1.7 53,647 + +1.4 53,647 + +1.6 53,657 + +1.2 53,657 + +1.3 53,658 - -0.6 53,658 - -1.2 53,664 - -0.3 53,824 + +0.7 53,825 - +1.3 53,825 - +0.2 53,914 + -0.9 53,914 + +0.3
Or see this region's nucleotide sequence