Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05766

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05765 and H281DRAFT_05766 are separated by 20 nucleotidesH281DRAFT_05766 and H281DRAFT_05767 are separated by 100 nucleotidesH281DRAFT_05767 and H281DRAFT_05768 are separated by 49 nucleotides H281DRAFT_05765: H281DRAFT_05765 - flagellar hook protein FlgE, at 38,079 to 39,587 _05765 H281DRAFT_05766: H281DRAFT_05766 - flagellar basal-body rod protein FlgF, at 39,608 to 40,366 _05766 H281DRAFT_05767: H281DRAFT_05767 - flagellar basal-body rod protein FlgG, at 40,467 to 41,255 _05767 H281DRAFT_05768: H281DRAFT_05768 - flagellar L-ring protein precursor FlgH, at 41,305 to 42,003 _05768 Position (kb) 39 40 41Strain fitness (log2 ratio) -1 0 1 2at 38.688 kb on + strand, within H281DRAFT_05765at 38.688 kb on + strand, within H281DRAFT_05765at 38.688 kb on + strand, within H281DRAFT_05765at 38.688 kb on + strand, within H281DRAFT_05765at 38.688 kb on + strand, within H281DRAFT_05765at 38.689 kb on - strand, within H281DRAFT_05765at 38.689 kb on - strand, within H281DRAFT_05765at 38.763 kb on + strand, within H281DRAFT_05765at 38.763 kb on + strand, within H281DRAFT_05765at 38.764 kb on - strand, within H281DRAFT_05765at 38.764 kb on - strand, within H281DRAFT_05765at 38.841 kb on + strand, within H281DRAFT_05765at 38.841 kb on + strand, within H281DRAFT_05765at 38.841 kb on + strandat 38.841 kb on + strand, within H281DRAFT_05765at 38.841 kb on + strand, within H281DRAFT_05765at 38.842 kb on - strand, within H281DRAFT_05765at 38.842 kb on - strand, within H281DRAFT_05765at 38.842 kb on - strand, within H281DRAFT_05765at 38.842 kb on - strand, within H281DRAFT_05765at 38.842 kb on - strand, within H281DRAFT_05765at 38.842 kb on - strand, within H281DRAFT_05765at 38.842 kb on - strand, within H281DRAFT_05765at 38.843 kb on + strand, within H281DRAFT_05765at 38.844 kb on - strand, within H281DRAFT_05765at 38.892 kb on + strand, within H281DRAFT_05765at 38.893 kb on - strand, within H281DRAFT_05765at 38.893 kb on - strand, within H281DRAFT_05765at 38.898 kb on + strand, within H281DRAFT_05765at 38.898 kb on + strand, within H281DRAFT_05765at 38.919 kb on + strand, within H281DRAFT_05765at 39.186 kb on + strand, within H281DRAFT_05765at 39.289 kb on - strand, within H281DRAFT_05765at 39.371 kb on + strand, within H281DRAFT_05765at 39.522 kb on + strandat 39.523 kb on - strandat 39.523 kb on - strandat 39.523 kb on - strandat 39.623 kb on + strandat 39.920 kb on + strand, within H281DRAFT_05766at 40.360 kb on + strandat 40.361 kb on - strandat 40.415 kb on + strandat 40.415 kb on + strandat 40.415 kb on + strandat 40.416 kb on - strandat 40.416 kb on - strandat 40.416 kb on - strandat 40.416 kb on - strandat 40.454 kb on + strandat 40.454 kb on + strandat 40.467 kb on - strandat 40.482 kb on + strandat 40.483 kb on - strandat 40.483 kb on - strandat 40.483 kb on - strandat 40.484 kb on + strandat 40.602 kb on + strandat 40.602 kb on + strand, within H281DRAFT_05767at 40.708 kb on - strand, within H281DRAFT_05767at 40.808 kb on + strand, within H281DRAFT_05767at 41.069 kb on + strand, within H281DRAFT_05767at 41.271 kb on + strandat 41.275 kb on + strandat 41.275 kb on + strandat 41.276 kb on - strandat 41.286 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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38,688 + H281DRAFT_05765 0.40 +0.9
38,688 + H281DRAFT_05765 0.40 +1.2
38,688 + H281DRAFT_05765 0.40 +1.0
38,688 + H281DRAFT_05765 0.40 +1.1
38,688 + H281DRAFT_05765 0.40 +1.3
38,689 - H281DRAFT_05765 0.40 +1.2
38,689 - H281DRAFT_05765 0.40 +0.9
38,763 + H281DRAFT_05765 0.45 +1.3
38,763 + H281DRAFT_05765 0.45 +1.4
38,764 - H281DRAFT_05765 0.45 +1.1
38,764 - H281DRAFT_05765 0.45 +0.9
38,841 + H281DRAFT_05765 0.50 +0.5
38,841 + H281DRAFT_05765 0.50 +1.7
38,841 + -1.5
38,841 + H281DRAFT_05765 0.50 +0.8
38,841 + H281DRAFT_05765 0.50 +0.8
38,842 - H281DRAFT_05765 0.51 +1.0
38,842 - H281DRAFT_05765 0.51 +1.7
38,842 - H281DRAFT_05765 0.51 +0.3
38,842 - H281DRAFT_05765 0.51 +0.2
38,842 - H281DRAFT_05765 0.51 +1.0
38,842 - H281DRAFT_05765 0.51 +0.7
38,842 - H281DRAFT_05765 0.51 +0.8
38,843 + H281DRAFT_05765 0.51 +1.4
38,844 - H281DRAFT_05765 0.51 -0.2
38,892 + H281DRAFT_05765 0.54 +0.9
38,893 - H281DRAFT_05765 0.54 +1.0
38,893 - H281DRAFT_05765 0.54 +0.1
38,898 + H281DRAFT_05765 0.54 +1.3
38,898 + H281DRAFT_05765 0.54 +0.2
38,919 + H281DRAFT_05765 0.56 +2.3
39,186 + H281DRAFT_05765 0.73 +0.8
39,289 - H281DRAFT_05765 0.80 +1.0
39,371 + H281DRAFT_05765 0.86 +0.7
39,522 + +1.8
39,523 - +0.6
39,523 - +1.1
39,523 - +1.7
39,623 + +0.2
39,920 + H281DRAFT_05766 0.41 +0.8
40,360 + +0.7
40,361 - +1.2
40,415 + +0.6
40,415 + +0.6
40,415 + +0.2
40,416 - +1.1
40,416 - +1.1
40,416 - +1.1
40,416 - +0.8
40,454 + +0.1
40,454 + +0.2
40,467 - +0.5
40,482 + +1.7
40,483 - +0.3
40,483 - -1.0
40,483 - +1.6
40,484 + +1.0
40,602 + +1.3
40,602 + H281DRAFT_05767 0.17 +0.7
40,708 - H281DRAFT_05767 0.31 +0.5
40,808 + H281DRAFT_05767 0.43 +0.7
41,069 + H281DRAFT_05767 0.76 +1.0
41,271 + +0.3
41,275 + +1.7
41,275 + +0.0
41,276 - +0.9
41,286 - +1.3

Or see this region's nucleotide sequence