Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05682 and H281DRAFT_05683 are separated by 155 nucleotides H281DRAFT_05683 and H281DRAFT_05684 are separated by 70 nucleotides H281DRAFT_05684 and H281DRAFT_05685 are separated by 221 nucleotides
H281DRAFT_05682: H281DRAFT_05682 - Sugar phosphate permease, at 97,819 to 99,102
_05682
H281DRAFT_05683: H281DRAFT_05683 - Nitroreductase, at 99,258 to 99,851
_05683
H281DRAFT_05684: H281DRAFT_05684 - Predicted arabinose efflux permease, MFS family, at 99,922 to 101,397
_05684
H281DRAFT_05685: H281DRAFT_05685 - hypothetical chaperone protein, at 101,619 to 102,869
_05685
Position (kb) 99
100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 98.994 kb on + strand at 98.995 kb on - strand at 98.998 kb on + strand at 98.998 kb on + strand at 98.998 kb on + strand at 98.999 kb on - strand at 98.999 kb on - strand at 99.061 kb on - strand at 99.061 kb on - strand at 99.110 kb on - strand at 99.149 kb on - strand at 99.160 kb on - strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.204 kb on + strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.205 kb on - strand at 99.331 kb on - strand, within H281DRAFT_05683 at 99.402 kb on + strand, within H281DRAFT_05683 at 99.402 kb on + strand, within H281DRAFT_05683 at 99.403 kb on - strand, within H281DRAFT_05683 at 99.403 kb on - strand, within H281DRAFT_05683 at 99.404 kb on + strand, within H281DRAFT_05683 at 99.582 kb on + strand, within H281DRAFT_05683 at 99.582 kb on + strand, within H281DRAFT_05683 at 99.878 kb on - strand at 99.924 kb on - strand at 100.049 kb on + strand at 100.142 kb on + strand, within H281DRAFT_05684 at 100.142 kb on + strand, within H281DRAFT_05684 at 100.142 kb on + strand, within H281DRAFT_05684 at 100.143 kb on - strand, within H281DRAFT_05684 at 100.143 kb on - strand, within H281DRAFT_05684 at 100.202 kb on + strand, within H281DRAFT_05684 at 100.202 kb on + strand, within H281DRAFT_05684 at 100.203 kb on - strand, within H281DRAFT_05684 at 100.295 kb on + strand, within H281DRAFT_05684 at 100.326 kb on + strand, within H281DRAFT_05684 at 100.326 kb on + strand, within H281DRAFT_05684 at 100.326 kb on + strand, within H281DRAFT_05684 at 100.326 kb on + strand, within H281DRAFT_05684 at 100.327 kb on - strand, within H281DRAFT_05684 at 100.331 kb on + strand, within H281DRAFT_05684 at 100.331 kb on + strand, within H281DRAFT_05684 at 100.332 kb on - strand, within H281DRAFT_05684 at 100.332 kb on - strand, within H281DRAFT_05684 at 100.332 kb on - strand, within H281DRAFT_05684 at 100.427 kb on + strand, within H281DRAFT_05684 at 100.427 kb on + strand, within H281DRAFT_05684 at 100.427 kb on + strand, within H281DRAFT_05684 at 100.457 kb on + strand, within H281DRAFT_05684 at 100.458 kb on - strand, within H281DRAFT_05684 at 100.481 kb on + strand, within H281DRAFT_05684 at 100.481 kb on + strand at 100.481 kb on + strand, within H281DRAFT_05684 at 100.482 kb on - strand, within H281DRAFT_05684 at 100.482 kb on - strand, within H281DRAFT_05684 at 100.482 kb on - strand, within H281DRAFT_05684 at 100.503 kb on - strand, within H281DRAFT_05684 at 100.752 kb on + strand, within H281DRAFT_05684 at 100.753 kb on - strand, within H281DRAFT_05684 at 100.753 kb on - strand, within H281DRAFT_05684 at 100.753 kb on - strand, within H281DRAFT_05684 at 100.753 kb on - strand, within H281DRAFT_05684 at 100.850 kb on - strand, within H281DRAFT_05684 at 100.967 kb on + strand, within H281DRAFT_05684 at 100.968 kb on - strand, within H281DRAFT_05684 at 101.060 kb on + strand, within H281DRAFT_05684 at 101.060 kb on + strand, within H281DRAFT_05684 at 101.061 kb on - strand, within H281DRAFT_05684 at 101.074 kb on - strand, within H281DRAFT_05684 at 101.153 kb on + strand, within H281DRAFT_05684 at 101.153 kb on + strand, within H281DRAFT_05684 at 101.153 kb on + strand, within H281DRAFT_05684 at 101.153 kb on + strand, within H281DRAFT_05684 at 101.153 kb on + strand, within H281DRAFT_05684 at 101.154 kb on - strand, within H281DRAFT_05684 at 101.154 kb on - strand, within H281DRAFT_05684 at 101.154 kb on - strand, within H281DRAFT_05684 at 101.154 kb on - strand, within H281DRAFT_05684 at 101.154 kb on - strand, within H281DRAFT_05684 at 101.154 kb on - strand at 101.236 kb on + strand, within H281DRAFT_05684 at 101.237 kb on - strand, within H281DRAFT_05684 at 101.422 kb on + strand at 101.423 kb on - strand at 101.423 kb on - strand at 101.505 kb on - strand at 101.531 kb on + strand at 101.531 kb on + strand at 101.531 kb on + strand at 101.532 kb on - strand at 101.532 kb on - strand at 101.532 kb on - strand at 101.532 kb on - strand at 101.532 kb on - strand at 101.532 kb on - strand at 101.565 kb on + strand at 101.566 kb on - strand at 101.625 kb on + strand at 101.625 kb on + strand at 101.625 kb on + strand at 101.625 kb on + strand at 101.625 kb on + strand at 101.626 kb on - strand at 101.626 kb on - strand at 101.626 kb on - strand at 101.626 kb on - strand at 101.645 kb on + strand at 101.645 kb on + strand at 101.646 kb on - strand at 101.662 kb on + strand at 101.745 kb on - strand, within H281DRAFT_05685 at 101.791 kb on - strand, within H281DRAFT_05685 at 101.895 kb on + strand, within H281DRAFT_05685 at 101.895 kb on + strand, within H281DRAFT_05685 at 101.895 kb on + strand, within H281DRAFT_05685 at 101.896 kb on - strand, within H281DRAFT_05685 at 101.896 kb on - strand, within H281DRAFT_05685 at 102.117 kb on + strand, within H281DRAFT_05685 at 102.173 kb on + strand, within H281DRAFT_05685 at 102.174 kb on - strand, within H281DRAFT_05685 at 102.231 kb on - strand at 102.298 kb on + strand, within H281DRAFT_05685
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 98,994 + +0.1 98,995 - +3.0 98,998 + +0.4 98,998 + -0.1 98,998 + +0.4 98,999 - -0.9 98,999 - +0.6 99,061 - -0.6 99,061 - -0.1 99,110 - -0.4 99,149 - +0.8 99,160 - -0.2 99,204 + -0.2 99,204 + +0.5 99,204 + +1.1 99,204 + +0.2 99,204 + +0.6 99,204 + +0.3 99,204 + +0.1 99,204 + +1.8 99,204 + -0.2 99,205 - +0.3 99,205 - +1.5 99,205 - +0.3 99,205 - +0.2 99,205 - +2.3 99,205 - +0.4 99,205 - -0.1 99,205 - +0.2 99,205 - +0.4 99,205 - +0.3 99,205 - +0.1 99,331 - H281DRAFT_05683 0.12 +0.1 99,402 + H281DRAFT_05683 0.24 -0.1 99,402 + H281DRAFT_05683 0.24 +0.2 99,403 - H281DRAFT_05683 0.24 +0.0 99,403 - H281DRAFT_05683 0.24 +0.2 99,404 + H281DRAFT_05683 0.25 +0.6 99,582 + H281DRAFT_05683 0.55 +0.5 99,582 + H281DRAFT_05683 0.55 -0.2 99,878 - +0.3 99,924 - +0.2 100,049 + -0.1 100,142 + H281DRAFT_05684 0.15 +0.3 100,142 + H281DRAFT_05684 0.15 +0.1 100,142 + H281DRAFT_05684 0.15 -0.2 100,143 - H281DRAFT_05684 0.15 +0.5 100,143 - H281DRAFT_05684 0.15 +0.0 100,202 + H281DRAFT_05684 0.19 +0.6 100,202 + H281DRAFT_05684 0.19 +0.3 100,203 - H281DRAFT_05684 0.19 -0.1 100,295 + H281DRAFT_05684 0.25 +0.2 100,326 + H281DRAFT_05684 0.27 +0.1 100,326 + H281DRAFT_05684 0.27 +0.7 100,326 + H281DRAFT_05684 0.27 +2.2 100,326 + H281DRAFT_05684 0.27 -0.2 100,327 - H281DRAFT_05684 0.27 +0.2 100,331 + H281DRAFT_05684 0.28 -0.6 100,331 + H281DRAFT_05684 0.28 -0.0 100,332 - H281DRAFT_05684 0.28 +0.2 100,332 - H281DRAFT_05684 0.28 -0.3 100,332 - H281DRAFT_05684 0.28 -0.2 100,427 + H281DRAFT_05684 0.34 +0.5 100,427 + H281DRAFT_05684 0.34 -0.1 100,427 + H281DRAFT_05684 0.34 -0.3 100,457 + H281DRAFT_05684 0.36 +0.4 100,458 - H281DRAFT_05684 0.36 +0.2 100,481 + H281DRAFT_05684 0.38 +0.2 100,481 + -1.4 100,481 + H281DRAFT_05684 0.38 +0.1 100,482 - H281DRAFT_05684 0.38 +0.4 100,482 - H281DRAFT_05684 0.38 +0.5 100,482 - H281DRAFT_05684 0.38 +0.1 100,503 - H281DRAFT_05684 0.39 -0.2 100,752 + H281DRAFT_05684 0.56 +0.3 100,753 - H281DRAFT_05684 0.56 -0.9 100,753 - H281DRAFT_05684 0.56 +0.2 100,753 - H281DRAFT_05684 0.56 +0.7 100,753 - H281DRAFT_05684 0.56 -0.5 100,850 - H281DRAFT_05684 0.63 +0.1 100,967 + H281DRAFT_05684 0.71 +0.1 100,968 - H281DRAFT_05684 0.71 +0.1 101,060 + H281DRAFT_05684 0.77 -0.2 101,060 + H281DRAFT_05684 0.77 +0.2 101,061 - H281DRAFT_05684 0.77 -1.1 101,074 - H281DRAFT_05684 0.78 +0.4 101,153 + H281DRAFT_05684 0.83 -0.2 101,153 + H281DRAFT_05684 0.83 +0.3 101,153 + H281DRAFT_05684 0.83 -0.1 101,153 + H281DRAFT_05684 0.83 +1.0 101,153 + H281DRAFT_05684 0.83 +0.1 101,154 - H281DRAFT_05684 0.83 +0.2 101,154 - H281DRAFT_05684 0.83 +0.3 101,154 - H281DRAFT_05684 0.83 +0.2 101,154 - H281DRAFT_05684 0.83 +0.1 101,154 - H281DRAFT_05684 0.83 -0.3 101,154 - +0.0 101,236 + H281DRAFT_05684 0.89 -0.6 101,237 - H281DRAFT_05684 0.89 +0.2 101,422 + -0.7 101,423 - -1.2 101,423 - +0.9 101,505 - -0.1 101,531 + +0.1 101,531 + +0.0 101,531 + +0.8 101,532 - -0.3 101,532 - -0.4 101,532 - +0.3 101,532 - -0.4 101,532 - +0.1 101,532 - -0.0 101,565 + +0.8 101,566 - -0.9 101,625 + +0.0 101,625 + +0.6 101,625 + +0.3 101,625 + +1.6 101,625 + +1.5 101,626 - -0.8 101,626 - +0.6 101,626 - -0.1 101,626 - -0.1 101,645 + +1.5 101,645 + -0.2 101,646 - +0.2 101,662 + -0.5 101,745 - H281DRAFT_05685 0.10 -0.5 101,791 - H281DRAFT_05685 0.14 +0.3 101,895 + H281DRAFT_05685 0.22 -2.2 101,895 + H281DRAFT_05685 0.22 -0.3 101,895 + H281DRAFT_05685 0.22 +0.5 101,896 - H281DRAFT_05685 0.22 +0.1 101,896 - H281DRAFT_05685 0.22 +1.3 102,117 + H281DRAFT_05685 0.40 -0.9 102,173 + H281DRAFT_05685 0.44 +0.5 102,174 - H281DRAFT_05685 0.44 -0.7 102,231 - +1.5 102,298 + H281DRAFT_05685 0.54 +0.5
Or see this region's nucleotide sequence