Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05158 and H281DRAFT_05159 overlap by 4 nucleotides H281DRAFT_05159 and H281DRAFT_05160 are separated by 141 nucleotides H281DRAFT_05160 and H281DRAFT_05161 overlap by 4 nucleotides H281DRAFT_05161 and H281DRAFT_05162 are separated by 368 nucleotides
H281DRAFT_05158: H281DRAFT_05158 - putative urate catabolism protein, at 112,021 to 112,971
_05158
H281DRAFT_05159: H281DRAFT_05159 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 112,968 to 113,489
_05159
H281DRAFT_05160: H281DRAFT_05160 - allantoicase, at 113,631 to 114,644
_05160
H281DRAFT_05161: H281DRAFT_05161 - ureidoglycolate lyase, at 114,641 to 115,153
_05161
H281DRAFT_05162: H281DRAFT_05162 - Uncharacterized membrane protein, at 115,522 to 116,715
_05162
Position (kb) 113
114
115 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 112.736 kb on - strand at 112.762 kb on + strand, within H281DRAFT_05158 at 112.867 kb on - strand, within H281DRAFT_05158 at 113.129 kb on + strand, within H281DRAFT_05159 at 113.129 kb on + strand at 113.406 kb on - strand, within H281DRAFT_05159 at 113.423 kb on - strand, within H281DRAFT_05159 at 113.562 kb on - strand at 113.796 kb on + strand, within H281DRAFT_05160 at 114.026 kb on + strand, within H281DRAFT_05160 at 114.051 kb on + strand, within H281DRAFT_05160 at 114.081 kb on - strand, within H281DRAFT_05160 at 114.081 kb on - strand, within H281DRAFT_05160 at 114.081 kb on - strand, within H281DRAFT_05160 at 114.081 kb on - strand at 114.136 kb on - strand, within H281DRAFT_05160 at 114.231 kb on - strand, within H281DRAFT_05160 at 114.409 kb on - strand, within H281DRAFT_05160 at 114.409 kb on - strand, within H281DRAFT_05160 at 114.438 kb on + strand, within H281DRAFT_05160 at 114.439 kb on - strand, within H281DRAFT_05160 at 114.535 kb on - strand, within H281DRAFT_05160 at 115.275 kb on - strand at 115.275 kb on - strand at 115.280 kb on + strand at 115.426 kb on + strand at 115.427 kb on - strand at 115.492 kb on - strand at 115.631 kb on + strand at 115.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 112,736 - +1.4 112,762 + H281DRAFT_05158 0.78 -2.2 112,867 - H281DRAFT_05158 0.89 -3.2 113,129 + H281DRAFT_05159 0.31 -1.6 113,129 + -0.6 113,406 - H281DRAFT_05159 0.84 -0.7 113,423 - H281DRAFT_05159 0.87 -1.3 113,562 - -0.4 113,796 + H281DRAFT_05160 0.16 -1.2 114,026 + H281DRAFT_05160 0.39 -0.2 114,051 + H281DRAFT_05160 0.41 -0.6 114,081 - H281DRAFT_05160 0.44 -0.1 114,081 - H281DRAFT_05160 0.44 -1.6 114,081 - H281DRAFT_05160 0.44 -0.4 114,081 - -1.4 114,136 - H281DRAFT_05160 0.50 -0.7 114,231 - H281DRAFT_05160 0.59 -2.0 114,409 - H281DRAFT_05160 0.77 -0.1 114,409 - H281DRAFT_05160 0.77 -0.3 114,438 + H281DRAFT_05160 0.80 -0.2 114,439 - H281DRAFT_05160 0.80 -0.8 114,535 - H281DRAFT_05160 0.89 -0.3 115,275 - +0.3 115,275 - -0.0 115,280 + +0.6 115,426 + +0.4 115,427 - +0.4 115,492 - -0.1 115,631 + -1.2 115,632 - -0.2
Or see this region's nucleotide sequence