Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04438 and H281DRAFT_04439 are separated by 346 nucleotides H281DRAFT_04439 and H281DRAFT_04440 are separated by 82 nucleotides H281DRAFT_04440 and H281DRAFT_04441 are separated by 174 nucleotides
H281DRAFT_04438: H281DRAFT_04438 - hypothetical protein, at 155,543 to 155,782
_04438
H281DRAFT_04439: H281DRAFT_04439 - outer membrane surface antigen, at 156,129 to 156,518
_04439
H281DRAFT_04440: H281DRAFT_04440 - Predicted NTP pyrophosphohydrolase, NUDIX family, at 156,601 to 157,050
_04440
H281DRAFT_04441: H281DRAFT_04441 - glutaminyl-tRNA synthetase, at 157,225 to 158,934
_04441
Position (kb) 156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2 at 155.820 kb on - strand at 155.831 kb on + strand at 155.854 kb on + strand at 155.869 kb on - strand at 155.869 kb on - strand at 155.885 kb on - strand at 155.899 kb on - strand at 155.899 kb on - strand at 155.899 kb on - strand at 155.899 kb on - strand at 155.903 kb on - strand at 155.903 kb on - strand at 156.042 kb on - strand at 156.042 kb on - strand at 156.042 kb on - strand at 156.042 kb on - strand at 156.105 kb on - strand at 156.112 kb on - strand at 156.243 kb on + strand, within H281DRAFT_04439 at 156.243 kb on + strand, within H281DRAFT_04439 at 156.244 kb on - strand, within H281DRAFT_04439 at 156.244 kb on - strand, within H281DRAFT_04439 at 156.516 kb on + strand at 156.517 kb on - strand at 156.815 kb on - strand, within H281DRAFT_04440 at 156.922 kb on - strand, within H281DRAFT_04440 at 156.947 kb on - strand, within H281DRAFT_04440 at 156.980 kb on - strand, within H281DRAFT_04440
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 155,820 - +0.2 155,831 + -1.1 155,854 + -0.1 155,869 - -0.4 155,869 - +0.6 155,885 - +0.1 155,899 - -0.6 155,899 - +0.2 155,899 - -0.7 155,899 - -1.1 155,903 - -1.5 155,903 - -1.8 156,042 - -0.1 156,042 - -0.1 156,042 - -0.4 156,042 - +0.4 156,105 - +1.9 156,112 - +0.0 156,243 + H281DRAFT_04439 0.29 +0.7 156,243 + H281DRAFT_04439 0.29 +0.3 156,244 - H281DRAFT_04439 0.29 -0.4 156,244 - H281DRAFT_04439 0.29 +0.5 156,516 + -0.6 156,517 - +0.3 156,815 - H281DRAFT_04440 0.48 +0.2 156,922 - H281DRAFT_04440 0.71 +1.1 156,947 - H281DRAFT_04440 0.77 +0.2 156,980 - H281DRAFT_04440 0.84 +0.5
Or see this region's nucleotide sequence