Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04420 and H281DRAFT_04421 are separated by 196 nucleotides H281DRAFT_04421 and H281DRAFT_04422 are separated by 255 nucleotides H281DRAFT_04422 and H281DRAFT_04423 are separated by 73 nucleotides H281DRAFT_04423 and H281DRAFT_04424 are separated by 379 nucleotides
H281DRAFT_04420: H281DRAFT_04420 - ornithine-acyl[acyl carrier protein] N-acyltransferase, at 141,227 to 142,039
_04420
H281DRAFT_04421: H281DRAFT_04421 - phosphohistidine phosphatase, SixA, at 142,236 to 142,694
_04421
H281DRAFT_04422: H281DRAFT_04422 - tRNA_Pro_TGG, at 142,950 to 143,026
_04422
H281DRAFT_04423: H281DRAFT_04423 - Protein of unknown function (DUF3309), at 143,100 to 143,258
_04423
H281DRAFT_04424: H281DRAFT_04424 - hypothetical protein, at 143,638 to 143,814
_04424
Position (kb) 142
143 Strain fitness (log2 ratio) -1
0
1
2
3 at 141.360 kb on - strand, within H281DRAFT_04420 at 141.369 kb on + strand, within H281DRAFT_04420 at 141.369 kb on + strand, within H281DRAFT_04420 at 141.370 kb on - strand, within H281DRAFT_04420 at 141.476 kb on - strand, within H281DRAFT_04420 at 141.507 kb on + strand, within H281DRAFT_04420 at 141.574 kb on + strand, within H281DRAFT_04420 at 141.575 kb on - strand, within H281DRAFT_04420 at 141.575 kb on - strand, within H281DRAFT_04420 at 141.576 kb on + strand, within H281DRAFT_04420 at 141.577 kb on - strand, within H281DRAFT_04420 at 141.757 kb on - strand, within H281DRAFT_04420 at 141.757 kb on - strand, within H281DRAFT_04420 at 141.810 kb on + strand, within H281DRAFT_04420 at 142.018 kb on + strand at 142.019 kb on - strand at 142.019 kb on - strand at 142.085 kb on + strand at 142.086 kb on - strand at 142.086 kb on - strand at 142.086 kb on - strand at 142.088 kb on + strand at 142.088 kb on + strand at 142.137 kb on + strand at 142.314 kb on + strand, within H281DRAFT_04421 at 142.315 kb on - strand, within H281DRAFT_04421 at 142.496 kb on - strand, within H281DRAFT_04421 at 143.053 kb on - strand at 143.093 kb on - strand at 143.103 kb on + strand at 143.103 kb on + strand at 143.103 kb on + strand at 143.103 kb on + strand at 143.103 kb on + strand at 143.104 kb on - strand at 143.390 kb on + strand at 143.398 kb on + strand at 143.398 kb on + strand at 143.399 kb on - strand at 143.399 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 141,360 - H281DRAFT_04420 0.16 +0.3 141,369 + H281DRAFT_04420 0.17 -0.2 141,369 + H281DRAFT_04420 0.17 +0.3 141,370 - H281DRAFT_04420 0.18 +0.0 141,476 - H281DRAFT_04420 0.31 +0.1 141,507 + H281DRAFT_04420 0.34 +0.4 141,574 + H281DRAFT_04420 0.43 -0.8 141,575 - H281DRAFT_04420 0.43 -0.0 141,575 - H281DRAFT_04420 0.43 -0.2 141,576 + H281DRAFT_04420 0.43 +0.2 141,577 - H281DRAFT_04420 0.43 +0.2 141,757 - H281DRAFT_04420 0.65 -0.1 141,757 - H281DRAFT_04420 0.65 +0.4 141,810 + H281DRAFT_04420 0.72 -0.0 142,018 + +0.0 142,019 - +1.1 142,019 - +0.0 142,085 + +0.1 142,086 - +0.1 142,086 - -0.6 142,086 - -0.3 142,088 + +0.1 142,088 + +0.5 142,137 + +0.1 142,314 + H281DRAFT_04421 0.17 +3.1 142,315 - H281DRAFT_04421 0.17 -0.2 142,496 - H281DRAFT_04421 0.57 -0.1 143,053 - -0.7 143,093 - +0.5 143,103 + +0.4 143,103 + -0.2 143,103 + -0.4 143,103 + +0.1 143,103 + -0.4 143,104 - +0.2 143,390 + +0.1 143,398 + -0.1 143,398 + +0.0 143,399 - +0.4 143,399 - +0.1
Or see this region's nucleotide sequence