Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04354 and H281DRAFT_04355 are separated by 115 nucleotides H281DRAFT_04355 and H281DRAFT_04356 are separated by 83 nucleotides H281DRAFT_04356 and H281DRAFT_04357 are separated by 4 nucleotides
H281DRAFT_04354: H281DRAFT_04354 - hypothetical protein, at 71,545 to 71,928
_04354
H281DRAFT_04355: H281DRAFT_04355 - RNA polymerase, sigma-24 subunit, RpoE, at 72,044 to 72,643
_04355
H281DRAFT_04356: H281DRAFT_04356 - anti sigma-E protein, RseA, at 72,727 to 73,341
_04356
H281DRAFT_04357: H281DRAFT_04357 - sigma E regulatory protein, MucB/RseB, at 73,346 to 74,389
_04357
Position (kb) 72
73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 71.932 kb on + strand at 71.941 kb on + strand at 71.973 kb on - strand at 71.998 kb on - strand at 71.998 kb on - strand at 71.998 kb on - strand at 72.677 kb on + strand at 72.677 kb on + strand at 72.686 kb on + strand at 72.686 kb on + strand at 72.711 kb on + strand at 72.711 kb on + strand at 72.711 kb on + strand at 72.712 kb on - strand at 72.712 kb on - strand at 72.878 kb on - strand, within H281DRAFT_04356 at 73.084 kb on - strand, within H281DRAFT_04356 at 73.247 kb on - strand, within H281DRAFT_04356 at 73.339 kb on + strand at 73.339 kb on + strand at 73.340 kb on - strand at 73.340 kb on - strand at 73.369 kb on - strand at 73.369 kb on - strand at 73.376 kb on - strand at 73.429 kb on + strand at 73.547 kb on + strand, within H281DRAFT_04357 at 73.589 kb on + strand, within H281DRAFT_04357 at 73.678 kb on + strand, within H281DRAFT_04357 at 73.678 kb on + strand, within H281DRAFT_04357 at 73.781 kb on + strand, within H281DRAFT_04357 at 73.781 kb on + strand, within H281DRAFT_04357 at 73.872 kb on - strand, within H281DRAFT_04357 at 74.012 kb on - strand, within H281DRAFT_04357 at 74.283 kb on + strand, within H281DRAFT_04357 at 74.283 kb on + strand, within H281DRAFT_04357 at 74.283 kb on + strand, within H281DRAFT_04357 at 74.283 kb on + strand, within H281DRAFT_04357 at 74.284 kb on - strand, within H281DRAFT_04357 at 74.284 kb on - strand, within H281DRAFT_04357 at 74.284 kb on - strand, within H281DRAFT_04357 at 74.286 kb on + strand at 74.315 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 71,932 + -0.1 71,941 + +0.5 71,973 - -0.3 71,998 - +0.1 71,998 - -1.9 71,998 - +0.4 72,677 + -0.1 72,677 + +0.4 72,686 + +0.5 72,686 + +0.4 72,711 + +0.1 72,711 + -0.1 72,711 + -1.3 72,712 - +1.4 72,712 - -1.7 72,878 - H281DRAFT_04356 0.25 +0.4 73,084 - H281DRAFT_04356 0.58 -0.6 73,247 - H281DRAFT_04356 0.85 -0.9 73,339 + -0.6 73,339 + +1.9 73,340 - -3.3 73,340 - +0.6 73,369 - -0.1 73,369 - -0.9 73,376 - -0.0 73,429 + +0.1 73,547 + H281DRAFT_04357 0.19 -1.0 73,589 + H281DRAFT_04357 0.23 +0.3 73,678 + H281DRAFT_04357 0.32 +1.0 73,678 + H281DRAFT_04357 0.32 -1.3 73,781 + H281DRAFT_04357 0.42 -0.4 73,781 + H281DRAFT_04357 0.42 +0.4 73,872 - H281DRAFT_04357 0.50 +1.0 74,012 - H281DRAFT_04357 0.64 -0.6 74,283 + H281DRAFT_04357 0.90 +0.1 74,283 + H281DRAFT_04357 0.90 -0.9 74,283 + H281DRAFT_04357 0.90 -0.2 74,283 + H281DRAFT_04357 0.90 -2.3 74,284 - H281DRAFT_04357 0.90 -1.6 74,284 - H281DRAFT_04357 0.90 -0.4 74,284 - H281DRAFT_04357 0.90 -0.1 74,286 + +0.9 74,315 - -0.7
Or see this region's nucleotide sequence