Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04132 and H281DRAFT_04133 are separated by 97 nucleotides H281DRAFT_04133 and H281DRAFT_04134 are separated by 80 nucleotides
H281DRAFT_04132: H281DRAFT_04132 - hypothetical protein, at 243,494 to 244,369
_04132
H281DRAFT_04133: H281DRAFT_04133 - thioredoxin, at 244,467 to 245,315
_04133
H281DRAFT_04134: H281DRAFT_04134 - tRNA A37 threonylcarbamoyladenosine dehydratase, at 245,396 to 246,247
_04134
Position (kb) 244
245
246 Strain fitness (log2 ratio) -1
0
1
2
3 at 244.022 kb on + strand, within H281DRAFT_04132 at 244.022 kb on + strand, within H281DRAFT_04132 at 244.022 kb on + strand, within H281DRAFT_04132 at 244.022 kb on + strand, within H281DRAFT_04132 at 244.022 kb on + strand, within H281DRAFT_04132 at 244.023 kb on - strand, within H281DRAFT_04132 at 244.023 kb on - strand, within H281DRAFT_04132 at 244.092 kb on - strand, within H281DRAFT_04132 at 244.434 kb on - strand at 244.639 kb on + strand, within H281DRAFT_04133 at 244.639 kb on + strand, within H281DRAFT_04133 at 244.640 kb on - strand, within H281DRAFT_04133 at 244.851 kb on + strand, within H281DRAFT_04133 at 244.852 kb on - strand, within H281DRAFT_04133 at 244.852 kb on - strand, within H281DRAFT_04133 at 245.154 kb on + strand, within H281DRAFT_04133 at 245.154 kb on + strand, within H281DRAFT_04133 at 245.154 kb on + strand, within H281DRAFT_04133 at 245.296 kb on + strand at 245.513 kb on - strand, within H281DRAFT_04134 at 245.577 kb on + strand, within H281DRAFT_04134 at 245.598 kb on + strand, within H281DRAFT_04134 at 245.598 kb on + strand, within H281DRAFT_04134 at 245.841 kb on + strand, within H281DRAFT_04134 at 245.841 kb on + strand, within H281DRAFT_04134 at 245.971 kb on - strand, within H281DRAFT_04134 at 245.971 kb on - strand, within H281DRAFT_04134 at 245.971 kb on - strand, within H281DRAFT_04134 at 246.217 kb on + strand at 246.218 kb on - strand at 246.220 kb on + strand at 246.250 kb on + strand at 246.251 kb on - strand at 246.251 kb on - strand at 246.251 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 244,022 + H281DRAFT_04132 0.60 +0.1 244,022 + H281DRAFT_04132 0.60 +0.2 244,022 + H281DRAFT_04132 0.60 +0.3 244,022 + H281DRAFT_04132 0.60 +0.3 244,022 + H281DRAFT_04132 0.60 +0.2 244,023 - H281DRAFT_04132 0.60 -1.5 244,023 - H281DRAFT_04132 0.60 +0.2 244,092 - H281DRAFT_04132 0.68 +0.5 244,434 - +0.2 244,639 + H281DRAFT_04133 0.20 +2.8 244,639 + H281DRAFT_04133 0.20 +0.2 244,640 - H281DRAFT_04133 0.20 -0.1 244,851 + H281DRAFT_04133 0.45 +0.3 244,852 - H281DRAFT_04133 0.45 +0.8 244,852 - H281DRAFT_04133 0.45 +0.5 245,154 + H281DRAFT_04133 0.81 -0.1 245,154 + H281DRAFT_04133 0.81 -0.1 245,154 + H281DRAFT_04133 0.81 +0.1 245,296 + -0.2 245,513 - H281DRAFT_04134 0.14 -0.0 245,577 + H281DRAFT_04134 0.21 -1.1 245,598 + H281DRAFT_04134 0.24 -0.6 245,598 + H281DRAFT_04134 0.24 +0.4 245,841 + H281DRAFT_04134 0.52 +0.2 245,841 + H281DRAFT_04134 0.52 +0.5 245,971 - H281DRAFT_04134 0.67 +0.2 245,971 - H281DRAFT_04134 0.67 -0.6 245,971 - H281DRAFT_04134 0.67 -1.0 246,217 + -0.5 246,218 - -0.1 246,220 + -0.7 246,250 + -0.1 246,251 - +0.8 246,251 - -0.3 246,251 - +1.4
Or see this region's nucleotide sequence