Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03995 and H281DRAFT_03996 are separated by 278 nucleotides H281DRAFT_03996 and H281DRAFT_03997 are separated by 106 nucleotides H281DRAFT_03997 and H281DRAFT_03998 are separated by 546 nucleotides
H281DRAFT_03995: H281DRAFT_03995 - hypothetical protein, at 100,202 to 100,351
_03995
H281DRAFT_03996: H281DRAFT_03996 - chorismate mutase (EC 5.4.99.5), at 100,630 to 101,226
_03996
H281DRAFT_03997: H281DRAFT_03997 - DNA polymerase-3 subunit epsilon, at 101,333 to 102,484
_03997
H281DRAFT_03998: H281DRAFT_03998 - hypothetical protein, at 103,031 to 103,279
_03998
Position (kb) 101
102
103 Strain fitness (log2 ratio) -2
-1
0
1
2 at 100.349 kb on + strand at 100.349 kb on + strand at 100.390 kb on - strand at 100.390 kb on - strand at 100.583 kb on + strand at 100.583 kb on + strand at 100.584 kb on - strand at 100.803 kb on + strand, within H281DRAFT_03996 at 101.136 kb on + strand, within H281DRAFT_03996 at 101.137 kb on - strand, within H281DRAFT_03996 at 101.192 kb on + strand at 101.192 kb on + strand at 101.192 kb on + strand at 101.192 kb on + strand at 101.192 kb on + strand at 101.193 kb on - strand at 101.193 kb on - strand at 101.193 kb on - strand at 101.193 kb on - strand at 101.305 kb on + strand at 101.306 kb on - strand at 101.345 kb on + strand at 101.421 kb on + strand at 101.421 kb on + strand at 101.502 kb on + strand, within H281DRAFT_03997 at 101.502 kb on + strand, within H281DRAFT_03997 at 101.502 kb on + strand, within H281DRAFT_03997 at 101.502 kb on + strand, within H281DRAFT_03997 at 101.503 kb on - strand, within H281DRAFT_03997 at 101.503 kb on - strand, within H281DRAFT_03997 at 101.503 kb on - strand, within H281DRAFT_03997 at 101.503 kb on - strand, within H281DRAFT_03997 at 101.503 kb on - strand, within H281DRAFT_03997 at 101.711 kb on + strand, within H281DRAFT_03997 at 101.711 kb on + strand, within H281DRAFT_03997 at 101.737 kb on + strand, within H281DRAFT_03997 at 101.738 kb on + strand, within H281DRAFT_03997 at 101.738 kb on + strand, within H281DRAFT_03997 at 101.739 kb on - strand, within H281DRAFT_03997 at 101.739 kb on - strand, within H281DRAFT_03997 at 101.741 kb on - strand, within H281DRAFT_03997 at 101.741 kb on - strand, within H281DRAFT_03997 at 101.741 kb on - strand, within H281DRAFT_03997 at 101.814 kb on + strand, within H281DRAFT_03997 at 101.815 kb on - strand, within H281DRAFT_03997 at 101.815 kb on - strand, within H281DRAFT_03997 at 101.815 kb on - strand, within H281DRAFT_03997 at 101.815 kb on - strand, within H281DRAFT_03997 at 101.815 kb on - strand, within H281DRAFT_03997 at 101.838 kb on + strand, within H281DRAFT_03997 at 101.838 kb on + strand, within H281DRAFT_03997 at 101.839 kb on - strand, within H281DRAFT_03997 at 101.839 kb on - strand, within H281DRAFT_03997 at 101.839 kb on - strand, within H281DRAFT_03997 at 101.847 kb on + strand, within H281DRAFT_03997 at 101.847 kb on + strand, within H281DRAFT_03997 at 101.933 kb on - strand, within H281DRAFT_03997 at 101.933 kb on - strand, within H281DRAFT_03997 at 101.951 kb on + strand, within H281DRAFT_03997 at 101.952 kb on - strand, within H281DRAFT_03997 at 101.952 kb on - strand, within H281DRAFT_03997 at 102.190 kb on + strand, within H281DRAFT_03997 at 102.365 kb on + strand, within H281DRAFT_03997 at 102.365 kb on + strand, within H281DRAFT_03997 at 102.365 kb on + strand, within H281DRAFT_03997 at 102.391 kb on + strand at 102.391 kb on + strand at 102.391 kb on + strand at 102.391 kb on + strand at 102.392 kb on - strand at 102.392 kb on - strand at 102.392 kb on - strand at 102.392 kb on - strand at 102.392 kb on - strand at 102.520 kb on + strand at 102.520 kb on + strand at 102.520 kb on + strand at 102.520 kb on + strand at 102.520 kb on + strand at 102.520 kb on + strand at 102.520 kb on + strand at 102.521 kb on - strand at 102.521 kb on - strand at 102.521 kb on - strand at 102.521 kb on - strand at 102.521 kb on - strand at 102.521 kb on - strand at 102.521 kb on - strand at 102.527 kb on + strand at 102.527 kb on + strand at 102.528 kb on - strand at 102.528 kb on - strand at 102.528 kb on - strand at 102.528 kb on - strand at 102.528 kb on - strand at 102.531 kb on + strand at 102.531 kb on + strand at 102.548 kb on + strand at 102.548 kb on + strand at 102.548 kb on + strand at 102.549 kb on - strand at 102.549 kb on - strand at 102.549 kb on - strand at 102.643 kb on + strand at 102.652 kb on + strand at 102.652 kb on + strand at 102.652 kb on + strand at 102.653 kb on - strand at 102.653 kb on - strand at 102.653 kb on - strand at 102.653 kb on - strand at 102.653 kb on - strand at 102.655 kb on - strand at 102.667 kb on + strand at 102.685 kb on + strand at 102.688 kb on + strand at 102.689 kb on - strand at 102.755 kb on + strand at 102.762 kb on + strand at 102.824 kb on - strand at 102.827 kb on + strand at 102.828 kb on - strand at 102.856 kb on + strand at 102.891 kb on + strand at 102.905 kb on + strand at 102.947 kb on + strand at 102.947 kb on + strand at 102.947 kb on + strand at 102.947 kb on + strand at 102.947 kb on + strand at 102.948 kb on - strand at 102.948 kb on - strand at 103.064 kb on - strand, within H281DRAFT_03998 at 103.064 kb on - strand, within H281DRAFT_03998 at 103.064 kb on - strand, within H281DRAFT_03998 at 103.208 kb on + strand, within H281DRAFT_03998 at 103.208 kb on + strand, within H281DRAFT_03998 at 103.208 kb on + strand, within H281DRAFT_03998 at 103.209 kb on - strand, within H281DRAFT_03998 at 103.449 kb on + strand at 103.451 kb on + strand at 103.452 kb on - strand at 103.458 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 100,349 + -0.0 100,349 + -1.2 100,390 - -0.4 100,390 - -1.0 100,583 + +0.1 100,583 + -0.6 100,584 - -0.2 100,803 + H281DRAFT_03996 0.29 +0.0 101,136 + H281DRAFT_03996 0.85 -0.2 101,137 - H281DRAFT_03996 0.85 -1.1 101,192 + -0.1 101,192 + -0.4 101,192 + +0.8 101,192 + -0.1 101,192 + -0.5 101,193 - -1.3 101,193 - +0.5 101,193 - +0.9 101,193 - -0.3 101,305 + +0.8 101,306 - -0.1 101,345 + -0.2 101,421 + +0.3 101,421 + +1.9 101,502 + H281DRAFT_03997 0.15 +0.3 101,502 + H281DRAFT_03997 0.15 -0.7 101,502 + H281DRAFT_03997 0.15 -1.0 101,502 + H281DRAFT_03997 0.15 +0.1 101,503 - H281DRAFT_03997 0.15 +0.4 101,503 - H281DRAFT_03997 0.15 +0.5 101,503 - H281DRAFT_03997 0.15 -0.5 101,503 - H281DRAFT_03997 0.15 -0.6 101,503 - H281DRAFT_03997 0.15 +0.3 101,711 + H281DRAFT_03997 0.33 +0.3 101,711 + H281DRAFT_03997 0.33 -0.4 101,737 + H281DRAFT_03997 0.35 -0.9 101,738 + H281DRAFT_03997 0.35 -0.3 101,738 + H281DRAFT_03997 0.35 +0.4 101,739 - H281DRAFT_03997 0.35 -0.1 101,739 - H281DRAFT_03997 0.35 +0.5 101,741 - H281DRAFT_03997 0.35 +2.7 101,741 - H281DRAFT_03997 0.35 +1.1 101,741 - H281DRAFT_03997 0.35 -0.1 101,814 + H281DRAFT_03997 0.42 -0.6 101,815 - H281DRAFT_03997 0.42 -0.4 101,815 - H281DRAFT_03997 0.42 -1.0 101,815 - H281DRAFT_03997 0.42 +0.5 101,815 - H281DRAFT_03997 0.42 +0.3 101,815 - H281DRAFT_03997 0.42 +1.1 101,838 + H281DRAFT_03997 0.44 -0.5 101,838 + H281DRAFT_03997 0.44 +0.4 101,839 - H281DRAFT_03997 0.44 -0.2 101,839 - H281DRAFT_03997 0.44 -0.1 101,839 - H281DRAFT_03997 0.44 -0.0 101,847 + H281DRAFT_03997 0.45 +0.2 101,847 + H281DRAFT_03997 0.45 +0.3 101,933 - H281DRAFT_03997 0.52 +0.2 101,933 - H281DRAFT_03997 0.52 +0.5 101,951 + H281DRAFT_03997 0.54 -0.0 101,952 - H281DRAFT_03997 0.54 -0.4 101,952 - H281DRAFT_03997 0.54 -1.3 102,190 + H281DRAFT_03997 0.74 -0.2 102,365 + H281DRAFT_03997 0.90 +0.5 102,365 + H281DRAFT_03997 0.90 -0.1 102,365 + H281DRAFT_03997 0.90 -1.3 102,391 + -0.4 102,391 + -0.6 102,391 + +0.3 102,391 + -0.2 102,392 - -0.6 102,392 - -0.9 102,392 - +0.5 102,392 - +1.8 102,392 - -0.3 102,520 + -0.5 102,520 + +1.4 102,520 + -0.3 102,520 + -1.1 102,520 + -0.2 102,520 + -0.8 102,520 + +0.3 102,521 - -0.6 102,521 - -0.5 102,521 - -0.4 102,521 - +0.2 102,521 - -0.0 102,521 - +0.2 102,521 - -1.8 102,527 + -0.3 102,527 + +0.5 102,528 - -1.8 102,528 - +0.1 102,528 - -0.1 102,528 - -0.2 102,528 - +0.3 102,531 + +0.7 102,531 + -0.6 102,548 + +0.1 102,548 + +0.1 102,548 + -0.1 102,549 - +1.2 102,549 - -0.0 102,549 - +0.4 102,643 + -0.5 102,652 + +0.0 102,652 + +0.3 102,652 + +0.5 102,653 - -0.5 102,653 - -0.4 102,653 - -0.4 102,653 - -0.3 102,653 - -0.1 102,655 - +0.4 102,667 + +0.7 102,685 + -0.4 102,688 + -0.1 102,689 - +1.4 102,755 + -0.4 102,762 + -0.5 102,824 - -0.3 102,827 + +0.6 102,828 - +0.4 102,856 + +1.3 102,891 + -0.2 102,905 + -0.3 102,947 + +0.1 102,947 + +0.1 102,947 + +0.8 102,947 + +1.1 102,947 + +0.1 102,948 - -0.4 102,948 - -0.3 103,064 - H281DRAFT_03998 0.13 +0.3 103,064 - H281DRAFT_03998 0.13 -0.6 103,064 - H281DRAFT_03998 0.13 -0.4 103,208 + H281DRAFT_03998 0.71 -0.4 103,208 + H281DRAFT_03998 0.71 +0.7 103,208 + H281DRAFT_03998 0.71 -1.6 103,209 - H281DRAFT_03998 0.71 -0.3 103,449 + -0.6 103,451 + -0.7 103,452 - +0.0 103,458 + -0.0
Or see this region's nucleotide sequence