Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03551 and H281DRAFT_03552 are separated by 267 nucleotides H281DRAFT_03552 and H281DRAFT_03553 are separated by 390 nucleotides H281DRAFT_03553 and H281DRAFT_03554 are separated by 334 nucleotides
H281DRAFT_03551: H281DRAFT_03551 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 54,897 to 56,603
_03551
H281DRAFT_03552: H281DRAFT_03552 - Uncharacterized damage-inducible protein DinB (forms a four-helix bundle), at 56,871 to 57,473
_03552
H281DRAFT_03553: H281DRAFT_03553 - hypothetical protein, at 57,864 to 58,115
_03553
H281DRAFT_03554: H281DRAFT_03554 - membrane protein DedA, SNARE-associated domain, at 58,450 to 59,442
_03554
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 56.272 kb on + strand, within H281DRAFT_03551 at 56.521 kb on + strand at 56.521 kb on + strand at 56.521 kb on + strand at 56.521 kb on + strand at 56.521 kb on + strand at 56.522 kb on - strand at 56.522 kb on - strand at 56.522 kb on - strand at 56.642 kb on + strand at 56.653 kb on + strand at 56.653 kb on + strand at 56.653 kb on + strand at 56.654 kb on - strand at 56.659 kb on + strand at 56.659 kb on + strand at 56.660 kb on - strand at 56.687 kb on - strand at 56.716 kb on + strand at 56.716 kb on + strand at 56.716 kb on + strand at 56.716 kb on + strand at 56.716 kb on + strand at 56.716 kb on + strand at 56.717 kb on - strand at 56.717 kb on - strand at 56.717 kb on - strand at 56.793 kb on + strand at 56.793 kb on + strand at 56.794 kb on - strand at 56.794 kb on - strand at 57.075 kb on + strand, within H281DRAFT_03552 at 57.076 kb on - strand, within H281DRAFT_03552 at 57.078 kb on + strand, within H281DRAFT_03552 at 57.078 kb on + strand, within H281DRAFT_03552 at 57.078 kb on + strand, within H281DRAFT_03552 at 57.079 kb on - strand, within H281DRAFT_03552 at 57.472 kb on - strand at 57.472 kb on - strand at 57.498 kb on - strand at 57.518 kb on + strand at 57.731 kb on + strand at 57.732 kb on - strand at 57.732 kb on - strand at 57.825 kb on + strand at 57.910 kb on - strand, within H281DRAFT_03553 at 58.013 kb on - strand, within H281DRAFT_03553 at 58.013 kb on - strand, within H281DRAFT_03553 at 58.013 kb on - strand, within H281DRAFT_03553 at 58.013 kb on - strand, within H281DRAFT_03553 at 58.024 kb on + strand, within H281DRAFT_03553 at 58.024 kb on + strand, within H281DRAFT_03553 at 58.024 kb on + strand, within H281DRAFT_03553 at 58.025 kb on - strand, within H281DRAFT_03553 at 58.025 kb on - strand, within H281DRAFT_03553 at 58.025 kb on - strand, within H281DRAFT_03553 at 58.025 kb on - strand, within H281DRAFT_03553 at 58.118 kb on + strand at 58.119 kb on - strand at 58.162 kb on + strand at 58.384 kb on - strand at 58.410 kb on + strand at 58.411 kb on - strand at 58.444 kb on - strand at 58.444 kb on - strand at 58.444 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 56,272 + H281DRAFT_03551 0.81 -0.1 56,521 + -0.9 56,521 + -0.5 56,521 + -0.3 56,521 + +0.1 56,521 + -0.3 56,522 - +0.7 56,522 - +0.4 56,522 - -0.6 56,642 + +0.3 56,653 + -0.4 56,653 + +0.8 56,653 + -1.1 56,654 - -0.0 56,659 + -0.3 56,659 + +4.2 56,660 - -0.3 56,687 - +0.4 56,716 + -1.6 56,716 + +0.2 56,716 + -0.6 56,716 + -1.2 56,716 + +1.1 56,716 + -0.5 56,717 - -0.3 56,717 - -0.9 56,717 - -0.1 56,793 + -0.2 56,793 + +1.0 56,794 - -0.4 56,794 - -0.3 57,075 + H281DRAFT_03552 0.34 -0.3 57,076 - H281DRAFT_03552 0.34 -0.5 57,078 + H281DRAFT_03552 0.34 +0.3 57,078 + H281DRAFT_03552 0.34 -0.4 57,078 + H281DRAFT_03552 0.34 -0.9 57,079 - H281DRAFT_03552 0.34 +0.1 57,472 - -0.0 57,472 - -0.6 57,498 - -0.4 57,518 + +0.3 57,731 + -0.1 57,732 - -1.8 57,732 - -1.1 57,825 + -0.0 57,910 - H281DRAFT_03553 0.18 +0.1 58,013 - H281DRAFT_03553 0.59 +0.2 58,013 - H281DRAFT_03553 0.59 -0.3 58,013 - H281DRAFT_03553 0.59 +0.4 58,013 - H281DRAFT_03553 0.59 +0.5 58,024 + H281DRAFT_03553 0.63 -0.1 58,024 + H281DRAFT_03553 0.63 -0.5 58,024 + H281DRAFT_03553 0.63 +0.1 58,025 - H281DRAFT_03553 0.64 +0.1 58,025 - H281DRAFT_03553 0.64 -0.8 58,025 - H281DRAFT_03553 0.64 +0.1 58,025 - H281DRAFT_03553 0.64 -0.7 58,118 + -0.2 58,119 - +0.4 58,162 + +0.2 58,384 - +0.2 58,410 + -0.2 58,411 - -0.0 58,444 - -1.0 58,444 - +0.2 58,444 - +0.3
Or see this region's nucleotide sequence