Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03340

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03339 and H281DRAFT_03340 are separated by 111 nucleotidesH281DRAFT_03340 and H281DRAFT_03341 are separated by 29 nucleotides H281DRAFT_03339: H281DRAFT_03339 - transcriptional regulator, LysR family, at 396,951 to 397,838 _03339 H281DRAFT_03340: H281DRAFT_03340 - hypothetical protein, at 397,950 to 398,966 _03340 H281DRAFT_03341: H281DRAFT_03341 - Predicted arabinose efflux permease, MFS family, at 398,996 to 400,357 _03341 Position (kb) 397 398 399Strain fitness (log2 ratio) -1 0 1at 397.004 kb on - strandat 397.914 kb on + strandat 397.918 kb on - strandat 398.471 kb on + strand, within H281DRAFT_03340at 398.471 kb on + strand, within H281DRAFT_03340at 398.723 kb on - strand, within H281DRAFT_03340at 398.740 kb on - strand, within H281DRAFT_03340at 398.746 kb on - strand, within H281DRAFT_03340at 399.077 kb on + strandat 399.148 kb on - strand, within H281DRAFT_03341at 399.518 kb on - strand, within H281DRAFT_03341at 399.518 kb on - strand, within H281DRAFT_03341at 399.726 kb on + strand, within H281DRAFT_03341at 399.890 kb on + strand, within H281DRAFT_03341at 399.891 kb on - strand, within H281DRAFT_03341

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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397,004 - -0.8
397,914 + -0.0
397,918 - -0.7
398,471 + H281DRAFT_03340 0.51 +0.0
398,471 + H281DRAFT_03340 0.51 +1.1
398,723 - H281DRAFT_03340 0.76 +0.4
398,740 - H281DRAFT_03340 0.78 +1.0
398,746 - H281DRAFT_03340 0.78 +0.5
399,077 + -0.2
399,148 - H281DRAFT_03341 0.11 +0.8
399,518 - H281DRAFT_03341 0.38 +1.2
399,518 - H281DRAFT_03341 0.38 -0.2
399,726 + H281DRAFT_03341 0.54 +1.6
399,890 + H281DRAFT_03341 0.66 +0.4
399,891 - H281DRAFT_03341 0.66 +0.3

Or see this region's nucleotide sequence