Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03157

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03156 and H281DRAFT_03157 are separated by 99 nucleotidesH281DRAFT_03157 and H281DRAFT_03158 are separated by 257 nucleotides H281DRAFT_03156: H281DRAFT_03156 - solute:Na+ symporter, SSS family, at 194,305 to 195,786 _03156 H281DRAFT_03157: H281DRAFT_03157 - transcriptional regulator, LysR family, at 195,886 to 196,836 _03157 H281DRAFT_03158: H281DRAFT_03158 - diguanylate cyclase/phosphodiesterase, at 197,094 to 198,539 _03158 Position (kb) 195 196 197Strain fitness (log2 ratio) -1 0 1 2 3at 195.160 kb on - strand, within H281DRAFT_03156at 195.562 kb on + strand, within H281DRAFT_03156at 195.580 kb on - strand, within H281DRAFT_03156at 195.827 kb on + strandat 196.022 kb on - strand, within H281DRAFT_03157at 196.175 kb on + strand, within H281DRAFT_03157at 196.183 kb on - strand, within H281DRAFT_03157at 196.217 kb on - strand, within H281DRAFT_03157at 196.407 kb on - strand, within H281DRAFT_03157at 196.838 kb on - strandat 197.495 kb on + strand, within H281DRAFT_03158

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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195,160 - H281DRAFT_03156 0.58 -0.4
195,562 + H281DRAFT_03156 0.85 -0.8
195,580 - H281DRAFT_03156 0.86 -1.0
195,827 + -0.2
196,022 - H281DRAFT_03157 0.14 +1.0
196,175 + H281DRAFT_03157 0.30 -0.5
196,183 - H281DRAFT_03157 0.31 +0.4
196,217 - H281DRAFT_03157 0.35 -0.4
196,407 - H281DRAFT_03157 0.55 +2.9
196,838 - -0.6
197,495 + H281DRAFT_03158 0.28 +0.4

Or see this region's nucleotide sequence