Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03047

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03046 and H281DRAFT_03047 are separated by 262 nucleotidesH281DRAFT_03047 and H281DRAFT_03048 are separated by 130 nucleotides H281DRAFT_03046: H281DRAFT_03046 - 6-phosphogluconate dehydrogenase (decarboxylating), at 75,790 to 77,199 _03046 H281DRAFT_03047: H281DRAFT_03047 - protein of unknown function (DUF4148), at 77,462 to 77,791 _03047 H281DRAFT_03048: H281DRAFT_03048 - Protein of unknown function (DUF2968), at 77,922 to 78,809 _03048 Position (kb) 77 78Strain fitness (log2 ratio) -2 -1 0 1at 76.477 kb on + strand, within H281DRAFT_03046at 76.478 kb on - strand, within H281DRAFT_03046at 76.478 kb on - strand, within H281DRAFT_03046at 76.478 kb on - strand, within H281DRAFT_03046at 76.478 kb on - strand, within H281DRAFT_03046at 76.478 kb on - strand, within H281DRAFT_03046at 76.575 kb on + strand, within H281DRAFT_03046at 76.632 kb on + strand, within H281DRAFT_03046at 76.633 kb on - strand, within H281DRAFT_03046at 76.771 kb on + strand, within H281DRAFT_03046at 76.792 kb on + strand, within H281DRAFT_03046at 76.793 kb on - strand, within H281DRAFT_03046at 76.834 kb on + strand, within H281DRAFT_03046at 76.834 kb on + strand, within H281DRAFT_03046at 76.835 kb on - strand, within H281DRAFT_03046at 76.835 kb on - strand, within H281DRAFT_03046at 76.835 kb on - strand, within H281DRAFT_03046at 76.980 kb on + strand, within H281DRAFT_03046at 76.993 kb on + strand, within H281DRAFT_03046at 76.993 kb on + strand, within H281DRAFT_03046at 76.994 kb on - strand, within H281DRAFT_03046at 76.994 kb on - strand, within H281DRAFT_03046at 77.074 kb on + strandat 77.075 kb on - strandat 77.149 kb on - strandat 77.149 kb on - strandat 77.277 kb on + strandat 77.329 kb on - strandat 77.361 kb on + strandat 77.374 kb on + strandat 77.375 kb on - strandat 77.391 kb on - strandat 77.391 kb on - strandat 77.398 kb on + strandat 77.399 kb on - strandat 77.402 kb on + strandat 77.402 kb on + strandat 77.454 kb on + strandat 77.455 kb on - strandat 77.456 kb on + strandat 77.456 kb on + strandat 77.456 kb on + strandat 77.456 kb on + strandat 77.456 kb on + strandat 77.457 kb on - strandat 77.457 kb on - strandat 77.473 kb on + strandat 77.473 kb on + strandat 77.474 kb on - strandat 77.474 kb on - strandat 77.597 kb on + strand, within H281DRAFT_03047at 77.598 kb on - strand, within H281DRAFT_03047at 77.768 kb on - strandat 77.768 kb on - strandat 77.778 kb on - strandat 77.789 kb on + strandat 77.789 kb on + strandat 77.790 kb on - strandat 78.176 kb on + strand, within H281DRAFT_03048at 78.176 kb on + strand, within H281DRAFT_03048at 78.176 kb on + strand, within H281DRAFT_03048at 78.385 kb on + strand, within H281DRAFT_03048at 78.385 kb on + strand, within H281DRAFT_03048at 78.397 kb on + strand, within H281DRAFT_03048at 78.397 kb on + strand, within H281DRAFT_03048at 78.398 kb on - strand, within H281DRAFT_03048at 78.398 kb on - strand, within H281DRAFT_03048at 78.400 kb on + strand, within H281DRAFT_03048at 78.400 kb on + strand, within H281DRAFT_03048at 78.401 kb on - strand, within H281DRAFT_03048at 78.401 kb on - strand, within H281DRAFT_03048at 78.401 kb on - strand, within H281DRAFT_03048at 78.401 kb on - strand, within H281DRAFT_03048at 78.786 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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76,477 + H281DRAFT_03046 0.49 -0.0
76,478 - H281DRAFT_03046 0.49 -0.3
76,478 - H281DRAFT_03046 0.49 -0.5
76,478 - H281DRAFT_03046 0.49 -0.9
76,478 - H281DRAFT_03046 0.49 +0.2
76,478 - H281DRAFT_03046 0.49 +0.0
76,575 + H281DRAFT_03046 0.56 -1.8
76,632 + H281DRAFT_03046 0.60 +0.0
76,633 - H281DRAFT_03046 0.60 -0.7
76,771 + H281DRAFT_03046 0.70 +0.1
76,792 + H281DRAFT_03046 0.71 -0.2
76,793 - H281DRAFT_03046 0.71 -0.0
76,834 + H281DRAFT_03046 0.74 -0.6
76,834 + H281DRAFT_03046 0.74 +0.0
76,835 - H281DRAFT_03046 0.74 -0.2
76,835 - H281DRAFT_03046 0.74 -0.4
76,835 - H281DRAFT_03046 0.74 -0.8
76,980 + H281DRAFT_03046 0.84 +0.2
76,993 + H281DRAFT_03046 0.85 +0.8
76,993 + H281DRAFT_03046 0.85 -0.1
76,994 - H281DRAFT_03046 0.85 -0.0
76,994 - H281DRAFT_03046 0.85 +0.4
77,074 + -0.2
77,075 - +0.6
77,149 - -0.0
77,149 - +0.2
77,277 + -0.0
77,329 - +0.2
77,361 + +0.5
77,374 + +0.6
77,375 - +0.4
77,391 - -0.6
77,391 - +0.1
77,398 + +0.9
77,399 - +0.1
77,402 + +0.4
77,402 + +0.6
77,454 + +0.6
77,455 - +0.5
77,456 + +0.4
77,456 + -1.0
77,456 + +0.7
77,456 + +0.4
77,456 + -0.2
77,457 - +0.8
77,457 - -1.1
77,473 + -0.2
77,473 + +1.2
77,474 - +0.2
77,474 - +0.3
77,597 + H281DRAFT_03047 0.41 +0.6
77,598 - H281DRAFT_03047 0.41 +0.6
77,768 - -0.4
77,768 - -0.4
77,778 - +0.3
77,789 + +0.0
77,789 + +0.1
77,790 - +0.9
78,176 + H281DRAFT_03048 0.29 +0.4
78,176 + H281DRAFT_03048 0.29 -1.4
78,176 + H281DRAFT_03048 0.29 -0.5
78,385 + H281DRAFT_03048 0.52 +0.5
78,385 + H281DRAFT_03048 0.52 +0.6
78,397 + H281DRAFT_03048 0.53 +0.5
78,397 + H281DRAFT_03048 0.53 -0.1
78,398 - H281DRAFT_03048 0.54 -0.6
78,398 - H281DRAFT_03048 0.54 +0.6
78,400 + H281DRAFT_03048 0.54 +1.1
78,400 + H281DRAFT_03048 0.54 -0.4
78,401 - H281DRAFT_03048 0.54 +0.4
78,401 - H281DRAFT_03048 0.54 +0.3
78,401 - H281DRAFT_03048 0.54 +0.4
78,401 - H281DRAFT_03048 0.54 -0.8
78,786 - -0.6

Or see this region's nucleotide sequence