Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02648 and H281DRAFT_02649 are separated by 100 nucleotides H281DRAFT_02649 and H281DRAFT_02650 are separated by 25 nucleotides
H281DRAFT_02648: H281DRAFT_02648 - diguanylate cyclase (GGDEF) domain-containing protein, at 228,991 to 230,361
_02648
H281DRAFT_02649: H281DRAFT_02649 - haloacetate dehalogenase, at 230,462 to 231,361
_02649
H281DRAFT_02650: H281DRAFT_02650 - Pimeloyl-ACP methyl ester carboxylesterase, at 231,387 to 232,295
_02650
Position (kb) 230
231
232 Strain fitness (log2 ratio) -2
-1
0
1
2 at 229.493 kb on - strand, within H281DRAFT_02648 at 229.682 kb on - strand, within H281DRAFT_02648 at 229.738 kb on + strand, within H281DRAFT_02648 at 229.837 kb on + strand, within H281DRAFT_02648 at 229.933 kb on + strand, within H281DRAFT_02648 at 230.292 kb on + strand at 230.464 kb on - strand at 230.598 kb on - strand, within H281DRAFT_02649 at 230.633 kb on + strand, within H281DRAFT_02649 at 230.633 kb on + strand, within H281DRAFT_02649 at 230.634 kb on - strand, within H281DRAFT_02649 at 230.932 kb on + strand, within H281DRAFT_02649 at 231.479 kb on - strand, within H281DRAFT_02650 at 231.562 kb on + strand, within H281DRAFT_02650 at 231.835 kb on + strand, within H281DRAFT_02650 at 231.866 kb on - strand, within H281DRAFT_02650 at 231.988 kb on + strand, within H281DRAFT_02650 at 232.198 kb on + strand, within H281DRAFT_02650 at 232.198 kb on + strand, within H281DRAFT_02650 at 232.198 kb on + strand, within H281DRAFT_02650 at 232.199 kb on - strand, within H281DRAFT_02650 at 232.199 kb on - strand, within H281DRAFT_02650 at 232.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 229,493 - H281DRAFT_02648 0.37 +0.8 229,682 - H281DRAFT_02648 0.50 -0.6 229,738 + H281DRAFT_02648 0.54 +0.2 229,837 + H281DRAFT_02648 0.62 -1.0 229,933 + H281DRAFT_02648 0.69 -0.1 230,292 + +0.3 230,464 - -1.8 230,598 - H281DRAFT_02649 0.15 +0.6 230,633 + H281DRAFT_02649 0.19 +0.4 230,633 + H281DRAFT_02649 0.19 +0.7 230,634 - H281DRAFT_02649 0.19 +1.5 230,932 + H281DRAFT_02649 0.52 +1.9 231,479 - H281DRAFT_02650 0.10 -0.4 231,562 + H281DRAFT_02650 0.19 +0.4 231,835 + H281DRAFT_02650 0.49 -0.4 231,866 - H281DRAFT_02650 0.53 +0.2 231,988 + H281DRAFT_02650 0.66 +0.5 232,198 + H281DRAFT_02650 0.89 +0.6 232,198 + H281DRAFT_02650 0.89 +1.5 232,198 + H281DRAFT_02650 0.89 -0.7 232,199 - H281DRAFT_02650 0.89 +1.0 232,199 - H281DRAFT_02650 0.89 -0.4 232,288 - +0.7
Or see this region's nucleotide sequence