Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02614 and H281DRAFT_02615 are separated by 24 nucleotides H281DRAFT_02615 and H281DRAFT_02616 are separated by 120 nucleotides H281DRAFT_02616 and H281DRAFT_02617 are separated by 68 nucleotides H281DRAFT_02617 and H281DRAFT_02618 overlap by 4 nucleotides
H281DRAFT_02614: H281DRAFT_02614 - L-glutamine ABC transporter membrane protein, at 191,296 to 191,952
_02614
H281DRAFT_02615: H281DRAFT_02615 - glutamine transport system substrate-binding protein, at 191,977 to 192,723
_02615
H281DRAFT_02616: H281DRAFT_02616 - hypothetical protein, at 192,844 to 193,047
_02616
H281DRAFT_02617: H281DRAFT_02617 - transcriptional regulator, RpiR family, at 193,116 to 193,976
_02617
H281DRAFT_02618: H281DRAFT_02618 - transcriptional regulator, LysR family, at 193,973 to 194,860
_02618
Position (kb) 192
193
194 Strain fitness (log2 ratio) -1
0
1
2 at 192.170 kb on + strand, within H281DRAFT_02615 at 192.171 kb on - strand, within H281DRAFT_02615 at 192.171 kb on - strand, within H281DRAFT_02615 at 192.171 kb on - strand, within H281DRAFT_02615 at 192.173 kb on + strand, within H281DRAFT_02615 at 192.173 kb on + strand, within H281DRAFT_02615 at 192.401 kb on + strand, within H281DRAFT_02615 at 192.404 kb on + strand, within H281DRAFT_02615 at 192.404 kb on + strand, within H281DRAFT_02615 at 192.925 kb on + strand, within H281DRAFT_02616 at 192.985 kb on + strand, within H281DRAFT_02616 at 192.988 kb on + strand, within H281DRAFT_02616 at 193.078 kb on + strand at 193.079 kb on - strand at 193.079 kb on - strand at 193.079 kb on - strand at 193.297 kb on + strand, within H281DRAFT_02617 at 193.395 kb on - strand, within H281DRAFT_02617 at 193.775 kb on - strand, within H281DRAFT_02617 at 193.994 kb on + strand at 193.994 kb on + strand at 193.995 kb on - strand at 193.995 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 192,170 + H281DRAFT_02615 0.26 +0.6 192,171 - H281DRAFT_02615 0.26 -0.3 192,171 - H281DRAFT_02615 0.26 -0.1 192,171 - H281DRAFT_02615 0.26 +0.7 192,173 + H281DRAFT_02615 0.26 +0.6 192,173 + H281DRAFT_02615 0.26 +0.1 192,401 + H281DRAFT_02615 0.57 +1.2 192,404 + H281DRAFT_02615 0.57 -0.2 192,404 + H281DRAFT_02615 0.57 +0.5 192,925 + H281DRAFT_02616 0.40 +0.1 192,985 + H281DRAFT_02616 0.69 +1.8 192,988 + H281DRAFT_02616 0.71 -1.0 193,078 + -0.3 193,079 - -1.0 193,079 - -0.2 193,079 - -0.1 193,297 + H281DRAFT_02617 0.21 +0.1 193,395 - H281DRAFT_02617 0.32 +0.5 193,775 - H281DRAFT_02617 0.77 -0.1 193,994 + +0.3 193,994 + +0.4 193,995 - +0.8 193,995 - -1.3
Or see this region's nucleotide sequence