Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02543 and H281DRAFT_02544 are separated by 105 nucleotides H281DRAFT_02544 and H281DRAFT_02545 are separated by 233 nucleotides H281DRAFT_02545 and H281DRAFT_02546 are separated by 187 nucleotides H281DRAFT_02546 and H281DRAFT_02547 are separated by 82 nucleotides
H281DRAFT_02543: H281DRAFT_02543 - GntR family transcriptional regulator, at 118,441 to 119,238
_02543
H281DRAFT_02544: H281DRAFT_02544 - Nicotinamidase-related amidase, at 119,344 to 119,907
_02544
H281DRAFT_02545: H281DRAFT_02545 - tRNA A37 threonylcarbamoyladenosine synthetase subunit TsaC/SUA5/YrdC, at 120,141 to 120,875
_02545
H281DRAFT_02546: H281DRAFT_02546 - transcriptional regulator, TetR family, at 121,063 to 121,629
_02546
H281DRAFT_02547: H281DRAFT_02547 - Nucleoside-diphosphate-sugar epimerase, at 121,712 to 122,605
_02547
Position (kb) 120
121 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 119.285 kb on + strand at 119.286 kb on - strand at 119.319 kb on + strand at 119.320 kb on - strand at 119.332 kb on - strand at 119.338 kb on + strand at 119.338 kb on + strand at 119.339 kb on - strand at 119.479 kb on + strand, within H281DRAFT_02544 at 119.480 kb on - strand, within H281DRAFT_02544 at 119.480 kb on - strand, within H281DRAFT_02544 at 119.701 kb on - strand, within H281DRAFT_02544 at 119.711 kb on + strand, within H281DRAFT_02544 at 119.712 kb on - strand, within H281DRAFT_02544 at 119.712 kb on - strand, within H281DRAFT_02544 at 119.712 kb on - strand, within H281DRAFT_02544 at 119.712 kb on - strand, within H281DRAFT_02544 at 119.752 kb on + strand, within H281DRAFT_02544 at 119.873 kb on - strand at 119.873 kb on - strand at 119.873 kb on - strand at 120.094 kb on - strand at 120.094 kb on - strand at 120.125 kb on + strand at 120.125 kb on + strand at 120.125 kb on + strand at 120.125 kb on + strand at 120.126 kb on - strand at 120.169 kb on + strand at 120.169 kb on + strand at 120.169 kb on + strand at 120.169 kb on + strand at 120.169 kb on + strand at 120.170 kb on - strand at 120.251 kb on + strand, within H281DRAFT_02545 at 120.397 kb on - strand, within H281DRAFT_02545 at 120.482 kb on + strand, within H281DRAFT_02545 at 120.483 kb on - strand, within H281DRAFT_02545 at 120.483 kb on - strand, within H281DRAFT_02545 at 120.529 kb on - strand, within H281DRAFT_02545 at 120.684 kb on + strand, within H281DRAFT_02545 at 120.685 kb on - strand, within H281DRAFT_02545 at 120.749 kb on + strand, within H281DRAFT_02545 at 120.776 kb on - strand, within H281DRAFT_02545 at 120.776 kb on - strand, within H281DRAFT_02545 at 120.789 kb on + strand, within H281DRAFT_02545 at 120.898 kb on + strand at 120.910 kb on - strand at 121.033 kb on + strand at 121.328 kb on + strand, within H281DRAFT_02546 at 121.490 kb on + strand, within H281DRAFT_02546 at 121.674 kb on + strand at 121.719 kb on + strand at 121.719 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 119,285 + -0.1 119,286 - -0.1 119,319 + +1.5 119,320 - -0.4 119,332 - +1.2 119,338 + -0.6 119,338 + +0.7 119,339 - -0.3 119,479 + H281DRAFT_02544 0.24 +0.2 119,480 - H281DRAFT_02544 0.24 -0.1 119,480 - H281DRAFT_02544 0.24 +0.5 119,701 - H281DRAFT_02544 0.63 +0.8 119,711 + H281DRAFT_02544 0.65 +0.0 119,712 - H281DRAFT_02544 0.65 -0.5 119,712 - H281DRAFT_02544 0.65 +0.0 119,712 - H281DRAFT_02544 0.65 +0.1 119,712 - H281DRAFT_02544 0.65 +1.5 119,752 + H281DRAFT_02544 0.72 +0.1 119,873 - +0.0 119,873 - -0.5 119,873 - -0.0 120,094 - +0.1 120,094 - +0.5 120,125 + +0.4 120,125 + +0.6 120,125 + +0.3 120,125 + +0.5 120,126 - +0.5 120,169 + +1.9 120,169 + -0.1 120,169 + -0.1 120,169 + +0.1 120,169 + +0.4 120,170 - +0.0 120,251 + H281DRAFT_02545 0.15 -0.4 120,397 - H281DRAFT_02545 0.35 +0.1 120,482 + H281DRAFT_02545 0.46 +0.1 120,483 - H281DRAFT_02545 0.47 +4.0 120,483 - H281DRAFT_02545 0.47 -0.1 120,529 - H281DRAFT_02545 0.53 -0.2 120,684 + H281DRAFT_02545 0.74 +0.1 120,685 - H281DRAFT_02545 0.74 -0.2 120,749 + H281DRAFT_02545 0.83 +0.4 120,776 - H281DRAFT_02545 0.86 +1.0 120,776 - H281DRAFT_02545 0.86 +0.2 120,789 + H281DRAFT_02545 0.88 +0.7 120,898 + -0.1 120,910 - +0.3 121,033 + -0.5 121,328 + H281DRAFT_02546 0.47 -0.4 121,490 + H281DRAFT_02546 0.75 -0.0 121,674 + +0.3 121,719 + +0.3 121,719 + -0.2
Or see this region's nucleotide sequence