Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02446

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02445 and H281DRAFT_02446 are separated by 210 nucleotidesH281DRAFT_02446 and H281DRAFT_02447 are separated by 391 nucleotides H281DRAFT_02445: H281DRAFT_02445 - cytochrome c peroxidase, at 8,225 to 9,676 _02445 H281DRAFT_02446: H281DRAFT_02446 - phospholipase C, at 9,887 to 11,665 _02446 H281DRAFT_02447: H281DRAFT_02447 - Short-chain dehydrogenase, at 12,057 to 13,073 _02447 Position (kb) 9 10 11 12Strain fitness (log2 ratio) -1 0 1at 8.952 kb on + strand, within H281DRAFT_02445at 8.953 kb on - strand, within H281DRAFT_02445at 9.234 kb on + strand, within H281DRAFT_02445at 9.531 kb on + strandat 9.532 kb on - strandat 9.691 kb on + strandat 9.936 kb on + strandat 9.936 kb on + strandat 9.937 kb on - strandat 10.301 kb on - strand, within H281DRAFT_02446at 10.310 kb on - strand, within H281DRAFT_02446at 10.311 kb on + strand, within H281DRAFT_02446at 10.345 kb on - strand, within H281DRAFT_02446at 10.537 kb on - strand, within H281DRAFT_02446at 10.959 kb on - strand, within H281DRAFT_02446at 11.013 kb on + strand, within H281DRAFT_02446at 11.014 kb on - strand, within H281DRAFT_02446at 11.095 kb on - strand, within H281DRAFT_02446at 11.197 kb on - strand, within H281DRAFT_02446at 11.347 kb on + strand, within H281DRAFT_02446at 11.463 kb on + strand, within H281DRAFT_02446at 11.464 kb on - strand, within H281DRAFT_02446at 11.712 kb on + strandat 11.712 kb on + strandat 11.713 kb on - strandat 11.713 kb on - strandat 11.713 kb on - strandat 11.713 kb on - strandat 11.819 kb on + strandat 11.819 kb on + strandat 11.826 kb on + strandat 11.838 kb on + strandat 11.838 kb on + strandat 11.842 kb on - strandat 11.940 kb on - strandat 11.988 kb on + strandat 12.243 kb on + strand, within H281DRAFT_02447at 12.354 kb on + strand, within H281DRAFT_02447at 12.354 kb on + strand, within H281DRAFT_02447at 12.528 kb on + strand, within H281DRAFT_02447at 12.528 kb on + strand, within H281DRAFT_02447at 12.528 kb on + strand, within H281DRAFT_02447at 12.529 kb on - strand, within H281DRAFT_02447at 12.550 kb on + strand, within H281DRAFT_02447at 12.550 kb on + strand, within H281DRAFT_02447at 12.560 kb on + strand, within H281DRAFT_02447at 12.638 kb on + strand, within H281DRAFT_02447

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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8,952 + H281DRAFT_02445 0.50 -0.3
8,953 - H281DRAFT_02445 0.50 -0.2
9,234 + H281DRAFT_02445 0.69 -0.6
9,531 + -1.0
9,532 - +0.5
9,691 + +0.0
9,936 + +1.2
9,936 + +0.8
9,937 - +0.3
10,301 - H281DRAFT_02446 0.23 -0.1
10,310 - H281DRAFT_02446 0.24 +1.1
10,311 + H281DRAFT_02446 0.24 +0.4
10,345 - H281DRAFT_02446 0.26 +0.3
10,537 - H281DRAFT_02446 0.37 +0.7
10,959 - H281DRAFT_02446 0.60 -0.4
11,013 + H281DRAFT_02446 0.63 +0.6
11,014 - H281DRAFT_02446 0.63 -0.5
11,095 - H281DRAFT_02446 0.68 +0.5
11,197 - H281DRAFT_02446 0.74 -0.0
11,347 + H281DRAFT_02446 0.82 -0.1
11,463 + H281DRAFT_02446 0.89 +1.5
11,464 - H281DRAFT_02446 0.89 +0.2
11,712 + +0.4
11,712 + +1.7
11,713 - +0.1
11,713 - +1.2
11,713 - -0.8
11,713 - -0.0
11,819 + +0.0
11,819 + +0.3
11,826 + -0.5
11,838 + +0.2
11,838 + +0.0
11,842 - -0.4
11,940 - +1.1
11,988 + +0.2
12,243 + H281DRAFT_02447 0.18 +1.1
12,354 + H281DRAFT_02447 0.29 -0.7
12,354 + H281DRAFT_02447 0.29 -0.7
12,528 + H281DRAFT_02447 0.46 +1.1
12,528 + H281DRAFT_02447 0.46 +0.1
12,528 + H281DRAFT_02447 0.46 +1.5
12,529 - H281DRAFT_02447 0.46 +0.1
12,550 + H281DRAFT_02447 0.48 +0.1
12,550 + H281DRAFT_02447 0.48 +0.5
12,560 + H281DRAFT_02447 0.49 -0.1
12,638 + H281DRAFT_02447 0.57 -0.0

Or see this region's nucleotide sequence