Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02331 and H281DRAFT_02332 are separated by 92 nucleotides H281DRAFT_02332 and H281DRAFT_02333 are separated by 136 nucleotides
H281DRAFT_02331: H281DRAFT_02331 - L-arabinose ABC transporter ATP-binding protein, at 487,461 to 489,023
_02331
H281DRAFT_02332: H281DRAFT_02332 - L-arabinose-binding protein, at 489,116 to 490,120
_02332
H281DRAFT_02333: H281DRAFT_02333 - aldehyde dehydrogenase (NAD+), at 490,257 to 491,705
_02333
Position (kb) 489
490
491 Strain fitness (log2 ratio) -1
0
1
2 at 488.209 kb on + strand, within H281DRAFT_02331 at 488.209 kb on + strand, within H281DRAFT_02331 at 488.336 kb on - strand, within H281DRAFT_02331 at 488.362 kb on + strand, within H281DRAFT_02331 at 488.692 kb on + strand, within H281DRAFT_02331 at 488.692 kb on + strand, within H281DRAFT_02331 at 488.693 kb on - strand, within H281DRAFT_02331 at 488.693 kb on - strand, within H281DRAFT_02331 at 488.935 kb on + strand at 489.118 kb on - strand at 489.367 kb on + strand, within H281DRAFT_02332 at 489.367 kb on + strand, within H281DRAFT_02332 at 489.787 kb on - strand, within H281DRAFT_02332 at 489.787 kb on - strand, within H281DRAFT_02332 at 490.013 kb on + strand, within H281DRAFT_02332 at 490.160 kb on + strand at 490.177 kb on + strand at 490.201 kb on + strand at 490.270 kb on + strand at 490.395 kb on - strand at 490.456 kb on - strand, within H281DRAFT_02333 at 490.456 kb on - strand, within H281DRAFT_02333 at 490.456 kb on - strand, within H281DRAFT_02333 at 490.462 kb on + strand, within H281DRAFT_02333 at 490.463 kb on - strand, within H281DRAFT_02333 at 490.499 kb on - strand, within H281DRAFT_02333 at 490.598 kb on - strand, within H281DRAFT_02333 at 490.673 kb on - strand, within H281DRAFT_02333
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 488,209 + H281DRAFT_02331 0.48 -0.1 488,209 + H281DRAFT_02331 0.48 +0.3 488,336 - H281DRAFT_02331 0.56 +0.0 488,362 + H281DRAFT_02331 0.58 -0.7 488,692 + H281DRAFT_02331 0.79 -1.5 488,692 + H281DRAFT_02331 0.79 +0.2 488,693 - H281DRAFT_02331 0.79 -0.5 488,693 - H281DRAFT_02331 0.79 -0.5 488,935 + +0.2 489,118 - -0.4 489,367 + H281DRAFT_02332 0.25 +0.5 489,367 + H281DRAFT_02332 0.25 +1.9 489,787 - H281DRAFT_02332 0.67 +0.1 489,787 - H281DRAFT_02332 0.67 +0.8 490,013 + H281DRAFT_02332 0.89 +0.1 490,160 + -0.1 490,177 + +0.7 490,201 + -0.1 490,270 + +0.0 490,395 - -0.2 490,456 - H281DRAFT_02333 0.14 -1.0 490,456 - H281DRAFT_02333 0.14 -0.4 490,456 - H281DRAFT_02333 0.14 -0.3 490,462 + H281DRAFT_02333 0.14 -0.7 490,463 - H281DRAFT_02333 0.14 +0.1 490,499 - H281DRAFT_02333 0.17 +0.1 490,598 - H281DRAFT_02333 0.24 +0.2 490,673 - H281DRAFT_02333 0.29 -0.0
Or see this region's nucleotide sequence