Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02319

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02318 and H281DRAFT_02319 are separated by 114 nucleotidesH281DRAFT_02319 and H281DRAFT_02320 are separated by 368 nucleotides H281DRAFT_02318: H281DRAFT_02318 - protein translocase subunit yidC, at 472,932 to 474,590 _02318 H281DRAFT_02319: H281DRAFT_02319 - hypothetical protein, at 474,705 to 475,112 _02319 H281DRAFT_02320: H281DRAFT_02320 - tRNA modification GTPase trmE, at 475,481 to 476,875 _02320 Position (kb) 474 475 476Strain fitness (log2 ratio) -1 0 1 2 3at 474.827 kb on - strand, within H281DRAFT_02319at 474.877 kb on + strand, within H281DRAFT_02319at 474.877 kb on + strand, within H281DRAFT_02319at 474.878 kb on - strand, within H281DRAFT_02319at 474.983 kb on + strand, within H281DRAFT_02319at 474.984 kb on - strand, within H281DRAFT_02319at 475.332 kb on + strandat 475.332 kb on + strandat 475.332 kb on + strandat 475.403 kb on + strandat 475.403 kb on + strandat 475.404 kb on - strandat 475.413 kb on + strandat 475.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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474,827 - H281DRAFT_02319 0.30 -0.3
474,877 + H281DRAFT_02319 0.42 +2.9
474,877 + H281DRAFT_02319 0.42 -0.0
474,878 - H281DRAFT_02319 0.42 +0.9
474,983 + H281DRAFT_02319 0.68 +0.1
474,984 - H281DRAFT_02319 0.68 +0.2
475,332 + +0.1
475,332 + +0.5
475,332 + -0.2
475,403 + +0.1
475,403 + -0.2
475,404 - -0.3
475,413 + -0.1
475,414 - -0.4

Or see this region's nucleotide sequence